PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G16401

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 703aa MW: 79321.2 Da PI: 5.9848

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G16401	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.2	1.6e-14	556	639	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l++ +v l++pk+f+ + ++t+tlede+g++++ + + ++r l++GWk+F++a++L gD +vF+l+g +f Ro02_G16401 556 FLKSLIHCNVVHGFSLTVPKQFCYLYlpF----HDTTITLEDERGEEYRTIF--LGERRR--LSGGWKRFCDAKKLVLGDLLVFHLVGPLKF 639 889999999************666432....5679***********..788777..9********************9884333 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MSSDRGGGIY WGRKEVSDSK GIAVIFAWVS IQERHLKSYV NLYSSLGWNS LVCHAHFLHA 60 FYPERAMSSA FDILNELVEE LRIKPCPVVF VGLSAGTKAC MYKVFQIIEG ICEGQLYPGE 120 YRLVRKCITG HIYDSGPVDF TTDLGTHYAL HPTILKMPGS SKLASWVAKG IASGLDALYL 180 TRFESQCAEY WQALYSSVNL GAPFLILCSD KDDLAPYHVI CTFCQRLQEF GGDVKLVKLN 240 GSSHLGHYKN YPIQYRSSVS HFLEKAALIF SQRIQKLEWE MTGMEGMHDE ISELICDLQK 300 AAVNSNESLR RVAVEPTDHF FLPSSAGNQN GTDSGSLQDE QKERSLCLSK PPSLSAHSVL 360 GQVLFDVCVP KNVDGWDIKF CGSLNGQPFA SARTLLGGMM LKVRIGWDDA QRISGSNLRA 420 SEIQNFFDQF DTLTPENFLE YFQEDEDEEE ENMTLPELLS VRSRSSFDDL TLHSRPSPPS 480 QRETLEETKQ NGFKPWKWKS PLSPIPNYTK RKNAGDPQRL GGYKRKITKP NYHEKSSVRN 540 KVQDILANLG PECPFFLKSL IHCNVVHGFS LTVPKQFCYL YLPFHDTTIT LEDERGEEYR 600 TIFLGERRRL SGGWKRFCDA KKLVLGDLLV FHLVGPLKFK VYKVEPDSLT EVDAAFILLK 660 MSLSTLFDAN LELVDDDESE DYNGQDFGSD LLCHPGLVTL EDV

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MSSDRGGGIY WGRKEVSDSK GIAVIFAWVS IQERHLKSYV NLYSSLGWNS LVCHAHFLHA  60
FYPERAMSSA FDILNELVEE LRIKPCPVVF VGLSAGTKAC MYKVFQIIEG ICEGQLYPGE  120
YRLVRKCITG HIYDSGPVDF TTDLGTHYAL HPTILKMPGS SKLASWVAKG IASGLDALYL  180
TRFESQCAEY WQALYSSVNL GAPFLILCSD KDDLAPYHVI CTFCQRLQEF GGDVKLVKLN  240
GSSHLGHYKN YPIQYRSSVS HFLEKAALIF SQRIQKLEWE MTGMEGMHDE ISELICDLQK  300
AAVNSNESLR RVAVEPTDHF FLPSSAGNQN GTDSGSLQDE QKERSLCLSK PPSLSAHSVL  360
GQVLFDVCVP KNVDGWDIKF CGSLNGQPFA SARTLLGGMM LKVRIGWDDA QRISGSNLRA  420
SEIQNFFDQF DTLTPENFLE YFQEDEDEEE ENMTLPELLS VRSRSSFDDL TLHSRPSPPS  480
QRETLEETKQ NGFKPWKWKS PLSPIPNYTK RKNAGDPQRL GGYKRKITKP NYHEKSSVRN  540
KVQDILANLG PECPFFLKSL IHCNVVHGFS LTVPKQFCYL YLPFHDTTIT LEDERGEEYR  600
TIFLGERRRL SGGWKRFCDA KKLVLGDLLV FHLVGPLKFK VYKVEPDSLT EVDAAFILLK  660
MSLSTLFDAN LELVDDDESE DYNGQDFGSD LLCHPGLVTL EDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-24	B3 family protein