PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G16208

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 748aa MW: 82070.7 Da PI: 4.7897

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G16208	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	594	635	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ ++ Ia+ ++ gRt+ q+k+++ k Ro02_G16208 594 RWSKQDTELFYEGIEQFGSD-FSMIAQLFP-GRTRHQIKLKFKK 635 8*****************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MVVREVDCRV RVAGRFRPKV KPKSTKVAST AAAFDLPNVI MENSIPASST VSDTVPSAAS 60 VDVGEVKLTD PIGSSSVNSE ILGGLEPSEN NEHLCSSVPS FDGDRTTKPS KSAAADTLQP 120 SGAASNGSEG SHSVFGKSAG ENADIFSGLE CLDDFLTQTT SGTVPASSKS PDKVDEGKCG 180 APTHCSVESS AFLACDVAEA QTFSDYCATQ DPVSCTRTEA AISNEHGEIR LETKVDGSFS 240 EFEALDVVSE VPISTGSRAE NFQPKLRVKK GKENPNIPPS EVESTTLSQA ANFGTGDMDE 300 SSLRAFPPRD VHDPLSPNFG DSIALNPTPN FQVNAESLAE TTQLDEAVFG DAAHSEGVCG 360 KGHKSGNGKA STASNRPQKC KGSAADEEAK DVTSSRKSRK RLPRHQVDEP GNDTNEDSLN 420 AENSSDVNGN EDREGNTARR KRALRKSKIL VSEHEKPVQK GKRTKKVPDE STEEPTKKKF 480 SHSTRRNRRH VDKSLLEIPE DEIDPQKLPI KDLIRLQEYR ERFAIKEAEK SKTPASNQSA 540 YDEFHREASH NEENFGFEQD RNSDEDQAGY RDRVSTSSSS FNYQSYMDKT PIARWSKQDT 600 ELFYEGIEQF GSDFSMIAQL FPGRTRHQIK LKFKKEDRQN PLRINEAFRR HSKDNSKYIS 660 VINELQKVAQ EKQESNVNEL TDMTGQEEVE LTHENNGGVT KPELDEIHDM ETDVSAEVRA 720 EEAAEVHSPL KSDESDDGNC FGGWDDEF

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MVVREVDCRV RVAGRFRPKV KPKSTKVAST AAAFDLPNVI MENSIPASST VSDTVPSAAS  60
VDVGEVKLTD PIGSSSVNSE ILGGLEPSEN NEHLCSSVPS FDGDRTTKPS KSAAADTLQP  120
SGAASNGSEG SHSVFGKSAG ENADIFSGLE CLDDFLTQTT SGTVPASSKS PDKVDEGKCG  180
APTHCSVESS AFLACDVAEA QTFSDYCATQ DPVSCTRTEA AISNEHGEIR LETKVDGSFS  240
EFEALDVVSE VPISTGSRAE NFQPKLRVKK GKENPNIPPS EVESTTLSQA ANFGTGDMDE  300
SSLRAFPPRD VHDPLSPNFG DSIALNPTPN FQVNAESLAE TTQLDEAVFG DAAHSEGVCG  360
KGHKSGNGKA STASNRPQKC KGSAADEEAK DVTSSRKSRK RLPRHQVDEP GNDTNEDSLN  420
AENSSDVNGN EDREGNTARR KRALRKSKIL VSEHEKPVQK GKRTKKVPDE STEEPTKKKF  480
SHSTRRNRRH VDKSLLEIPE DEIDPQKLPI KDLIRLQEYR ERFAIKEAEK SKTPASNQSA  540
YDEFHREASH NEENFGFEQD RNSDEDQAGY RDRVSTSSSS FNYQSYMDKT PIARWSKQDT  600
ELFYEGIEQF GSDFSMIAQL FPGRTRHQIK LKFKKEDRQN PLRINEAFRR HSKDNSKYIS  660
VINELQKVAQ EKQESNVNEL TDMTGQEEVE LTHENNGGVT KPELDEIHDM ETDVSAEVRA  720
EEAAEVHSPL KSDESDDGNC FGGWDDEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-47	MYB_related family protein