PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G15252

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 399aa MW: 44985.4 Da PI: 7.0886

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G15252	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	6e-33	258	313	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Ro02_G15252 258 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 313 79****************************************************97 PP
2	Myb_DNA-binding	45.7	1.5e-14	260	311	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v+a +qlGg t+k I + m+ g+t ++ks++qky+ Ro02_G15252 260 RRCWSPELHRRFVNALQQLGGSqvaTPKQIRELMQvDGLTNDEVKSHLQKYR 311 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGSVPPELSL DFRPTFVPKT ITDFLKEVSM IGNVTERLSK LDDFVKRLEE EMRKIDAFKR 60 ELPLCMFLLN DAILALKEDA RQCAAPNVQP VLEEFIPLKK DCDKNTGERI NHKKEKDSRD 120 KKNWMSSVQL WNTDNYHHPT SDFPYDRKQV CEIDSKRNEA GHGIANEDPF QTCRNRNGGR 180 AFMPFKAYPA FSVTAVRKED KEDLAVYGLS LLTPGIKNPK EESASSGSRS TCGRAVSFSA 240 ANVQSNLKSL PQQATARKQR RCWSPELHRR FVNALQQLGG SQVATPKQIR ELMQVDGLTN 300 DEVKSHLQKY RLHTRRVPAA KSAPANQSVV VLGDLWMSQD HYDDSSKANS SQSGSPQGPL 360 QLAENGGDDH EEEEDDDDDA KSESYSWKSH IHKPGKNDV

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGSVPPELSL DFRPTFVPKT ITDFLKEVSM IGNVTERLSK LDDFVKRLEE EMRKIDAFKR  60
ELPLCMFLLN DAILALKEDA RQCAAPNVQP VLEEFIPLKK DCDKNTGERI NHKKEKDSRD  120
KKNWMSSVQL WNTDNYHHPT SDFPYDRKQV CEIDSKRNEA GHGIANEDPF QTCRNRNGGR  180
AFMPFKAYPA FSVTAVRKED KEDLAVYGLS LLTPGIKNPK EESASSGSRS TCGRAVSFSA  240
ANVQSNLKSL PQQATARKQR RCWSPELHRR FVNALQQLGG SQVATPKQIR ELMQVDGLTN  300
DEVKSHLQKY RLHTRRVPAA KSAPANQSVV VLGDLWMSQD HYDDSSKANS SQSGSPQGPL  360
QLAENGGDDH EEEEDDDDDA KSESYSWKSH IHKPGKNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-59	G2-like family protein