PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G13775
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 502aa    MW: 56605 Da    PI: 6.6382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G13775genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.29.2e-1121374951374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  l++lL+ecA a+s ++  +a+++L +l ++asp+g +  +R++ayf++A+++r+++s+ ++++ +   ++         +a+++f+ +sP++kf+h+t
  Ro02_G13775 137 LITLLFECAVAISVENPGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMSSRVLNSWLGICSPMVNYKS-------IHSAFQVFNTISPFIKFAHFT 227
                  5789*******************************9999**********************987755544.......56899**************** PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaIlea+++ +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg++     s+e l etg++L++fA++lg++fef++++ k  + l+ ++ +
  Ro02_G13775 228 SNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRMEGPPHVRMTGFAT----SSEVLLETGKQLSNFARRLGLSFEFHPIARKFGDHLDASMVQ 321
                  ****************************************************....9**************************88888899******* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+ gE++aV++    h+l+d +++       ++kl+ +lsP++v++veqe++hn++sFl+rf+ +l+yys++fdslea lp+++ +r+ vE+ l++re
  Ro02_G13775 322 VRMGETVAVHWLQ--HSLYDATGADWR----TMKLIEELSPRIVTLVEQEMSHNGGSFLDRFVGSLHYYSTMFDSLEAYLPSDNPNRHLVEHCLMHRE 413
                  ************9..999988887777....******************************************************************* PP

         GRAS 294 ivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i n++a  g +r  +  ++++Wr+ l++   F +v +s + ++qa+l+l++++ s+gy++ + +g++ lgWkd +L+++SaW+
  Ro02_G13775 414 INNILAVGGPARSGED-KFRHWRSELGArNSFMQVGMSGNSMAQAQLILNMFPpSNGYSLVQGDGTIRLGWKDTSLYVASAWT 495
                  ***********77665.5********86599***************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MKAEFEMVHG NVNVIQPHAT NWINNSSTSV NPFPKPVSDL SQWVEHITKQ LIDDLPETTT  60
TETLHTAATS EDHYFIPSSH SGEFSPRKAT RRSFGDDEAS ADRDRYELQW GDELQLHAEN  120
SRRARELSKL DQHGLTLITL LFECAVAISV ENPGEAHRML LELTQMASPY GPSCAERVVA  180
YFAKAMSSRV LNSWLGICSP MVNYKSIHSA FQVFNTISPF IKFAHFTSNQ AILEAFHRRD  240
RVHIIDLDIM QGLQWPALFH ILATRMEGPP HVRMTGFATS SEVLLETGKQ LSNFARRLGL  300
SFEFHPIARK FGDHLDASMV QVRMGETVAV HWLQHSLYDA TGADWRTMKL IEELSPRIVT  360
LVEQEMSHNG GSFLDRFVGS LHYYSTMFDS LEAYLPSDNP NRHLVEHCLM HREINNILAV  420
GGPARSGEDK FRHWRSELGA RNSFMQVGMS GNSMAQAQLI LNMFPPSNGY SLVQGDGTIR  480
LGWKDTSLYV ASAWTCSHAS SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-140GRAS family protein