PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G10951

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 654aa MW: 74799.3 Da PI: 9.1279

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G10951	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	597	641	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g++ +qck ++ Ro02_G10951 597 VWSAVQERALVQALKTFPKEasqRWERVAAAVP-GKSVNQCKKKFS 641 6******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MGVQSKLRLI TYSQEIVDGQ PIYVSSNSLP VKALKYEPAG HAFHAVALKL RGWVEEVAGA 60 EEPKVVDNKE QTSLPSFDSY SSSKGKKKSG AEGKQQDHYA LLGLSHLRYL ATEEQIRKSY 120 RETALKYHPD KQASLLLAEE SEAAKQTKKD EIETHFKSVQ EAYEVLIDPV KRRIYDSTDE 180 FDDEIPTECA PQDFFKVFSP AFMRNGRWSV NQPIPFLGDE KTSLKDVDEF YNFWYSFRSW 240 REFPHEEEFD LEQAESRDHK RWMERQNAKL TEKARKEEYA RIRTLVDNAY KRDPRIVKRK 300 ETEKAEKQKK KQAKYLAKKL QEEEATRAAE EEKRRKEEEE KRAAEAALQQ KKLREKEKKL 360 LRKERSRLRT LSGPVISQHL LDLVEDDVES LCMSLNIEQL RKICDRMEGK QGVELAKVLR 420 DAHCGDNNDS EGKKEEKKPQ QQNGSVESNG TVLLASYEKK EKPWSKEEIE LLRKGMLKFP 480 KGTSRRWEVV SEFIGTGRSV EEILKATKTV LLQKPDSSKA FDSFLEKRKP APSIASPLTT 540 RVEVEGVATP QENENSADKT DKSEDKPGES SSGRAKDQSP NDPIAANGLS SGSDQDVWSA 600 VQERALVQAL KTFPKEASQR WERVAAAVPG KSVNQCKKKF SLLKESFRSK KTTA

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MGVQSKLRLI TYSQEIVDGQ PIYVSSNSLP VKALKYEPAG HAFHAVALKL RGWVEEVAGA  60
EEPKVVDNKE QTSLPSFDSY SSSKGKKKSG AEGKQQDHYA LLGLSHLRYL ATEEQIRKSY  120
RETALKYHPD KQASLLLAEE SEAAKQTKKD EIETHFKSVQ EAYEVLIDPV KRRIYDSTDE  180
FDDEIPTECA PQDFFKVFSP AFMRNGRWSV NQPIPFLGDE KTSLKDVDEF YNFWYSFRSW  240
REFPHEEEFD LEQAESRDHK RWMERQNAKL TEKARKEEYA RIRTLVDNAY KRDPRIVKRK  300
ETEKAEKQKK KQAKYLAKKL QEEEATRAAE EEKRRKEEEE KRAAEAALQQ KKLREKEKKL  360
LRKERSRLRT LSGPVISQHL LDLVEDDVES LCMSLNIEQL RKICDRMEGK QGVELAKVLR  420
DAHCGDNNDS EGKKEEKKPQ QQNGSVESNG TVLLASYEKK EKPWSKEEIE LLRKGMLKFP  480
KGTSRRWEVV SEFIGTGRSV EEILKATKTV LLQKPDSSKA FDSFLEKRKP APSIASPLTT  540
RVEVEGVATP QENENSADKT DKSEDKPGES SSGRAKDQSP NDPIAANGLS SGSDQDVWSA  600
VQERALVQAL KTFPKEASQR WERVAAAVPG KSVNQCKKKF SLLKESFRSK KTTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	356	KRRKEEEEKRAAEAALQQKKLREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-130	MYB family protein