PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G10943
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 464aa    MW: 53078.5 Da    PI: 5.4681
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G10943genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1804.2e-2544132190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  kfY eYA++vGF vr+ + ++   +g++  r++ C+k+g++ ++k +   e++ ra+ r gC+a++ vk+ek+gkw+vt++e++HnH+l+
  Ro02_G10943  44 KFYTEYARRVGFYVRVMQRRRG-IDGRTLARRLGCNKQGFSPNHKGNLGPEKKARASAREGCNATILVKMEKSGKWVVTRFEKDHNHPLV 132
                  6****************98887.9999*************************************************************96 PP
2FAR183.34e-26288378190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fY +Y++++GF+vr++++++s++n+ ++ ++fvCskeg+r+++    +++   + ++tr gC a+l+v +++ +kw+vtk+++eHnH+l+
  Ro02_G10943 288 EFYVAYGRHTGFTVRIHHNRRSRMNNMVIGQDFVCSKEGFRDKKYVYrDNRVLPPPPVTREGCAAMLRVALRDGEKWVVTKFVKEHNHTLM 378
                  6******************************************99882333344899********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MDLEEEEAGA VDGSVEVNMG DSEGGPIIEP YVGMEFESEE DAKKFYTEYA RRVGFYVRVM  60
QRRRGIDGRT LARRLGCNKQ GFSPNHKGNL GPEKKARASA REGCNATILV KMEKSGKWVV  120
TRFEKDHNHP LVVTANEFNT TGDKDKKIEE LMMELDRQDQ LCAAYREKLL SFITNVEAET  180
EELSAKIQVI VDNAGFVNQA NSTPSAMNSL CEFVLQGTME SESNNNNNNN NPFDSDESQS  240
CELPNDFDLC LGEVDKIIEQ PNETSALMGN PIEPYIGMEF KSRDSAREFY VAYGRHTGFT  300
VRIHHNRRSR MNNMVIGQDF VCSKEGFRDK KYVYRDNRVL PPPPVTREGC AAMLRVALRD  360
GEKWVVTKFV KEHNHTLMSP SKVPWRGSGK NLINEDEKDR KIRELTIELS NERQRCKRRC  420
AAYQEQLNRL LKDIQDHSDH LSERVQNIVK NIRELESEQS EDSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413418RQRCKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.12e-65FAR1 family protein