PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G10477

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 299aa MW: 33142.9 Da PI: 5.5563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G10477	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W + Ed+ll+d++k +G g W+ +a++ g++R++k+c++rw +yl Ro02_G10477 14 KGAWMAAEDKLLLDYIKNHGEGKWSNVAKETGLKRCGKSCRLRWMNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	51.3	2.7e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ Ro02_G10477 67 RGSISDDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111 78889***************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MGRGPRCSKD GLNKGAWMAA EDKLLLDYIK NHGEGKWSNV AKETGLKRCG KSCRLRWMNY 60 LRPDIKRGSI SDDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLAKKMAQAQ 120 SSSQSKCNNA IVKTTSPSTV IPQQHTPIAS PSTAPTANDV HHQNPYDFSN NVAINTDYLV 180 KAVNSVDSQM SSEQGSQSTT TTGDGDDDHL GSSPTNFMMD FNTDDHEDFC KILDCDFANL 240 NNAIDDHGDH GVDHSGPILV LPKQMIMDKN IQAADFGSLA SFLESDEDWL RNDLNVMLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	7e-56	MYB family protein