PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G09696
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 396aa    MW: 44658.1 Da    PI: 4.3235
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G09696genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.3e-131764350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 i+n    + +  kR++++ K A+EL +LC+a+v+++ +++tg++  ++
  Ro02_G09696 17 IKNLKSLEKSIQKRKTTLKKSASELAILCGAQVCIVFLGPTGNVEVWP 64
                 666666666889********************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MVKKSQTTKF GEEIKEIKNL KSLEKSIQKR KTTLKKSASE LAILCGAQVC IVFLGPTGNV  60
EVWPENPAEA TSIIIKYKQG KKKTKLFREA NRSKTADEKI EENNGFNDID GFLNTLENFE  120
ENKGLEMGDD VFDQFLNTLD NVAGDRGFAK GDDVIYQFLN SLENFEENKG FDKGENIDQF  180
VNNTVEIFGE DKGFNMGDKG LDNFHIDDDQ SLNLEEINKS FEKGYEGLDN WSGGSLIDCV  240
DERIGSIEGH PIRVCDDHDQ QQFEYNNHDH VLNNGSNSEK SENHVLRVHN FDQLFQNDFL  300
GDTFAECSGS NAHMVATPGF ELPQIDNVCG MSPWEISFPT LQYSGFEAAD YSLNNSTKYE  360
NDNNNISPLL PSRDQRFGGA AKHSWEILEE TKDDCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-07M-type_MADS family protein