PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G08790

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 665aa MW: 76353.9 Da PI: 9.1281

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G08790	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.6	6.4e-16	172	264	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY+ Y+ +GF++r+ k + ng+i +r ++Csk+g++++ k + ++k r +r++ r +C a + v+ +k + ++v+++ +eH+H+l Ro02_G08790 172 KFYEIYSAALGFRLRRLKCDRG-LNGTILRRVWCCSKQGQKNKPKCEvrvsSNKGRPPRKSMREKCLAAFGVRYSKeIDAYYVKSFTTEHSHDL 264 6***************9998.8999*************9999998899999*************9989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MRKNRSLPSP IIQKLQRLQR NREQEVAKKE EDRASSVWAV GLSQQSRFSN GTAEHHIFGT 60 LHFCEHISHP NQMRSKRERS FVPVCNGDQT RKLVYAMSSG SLIHNNESVV EVESAEEDDS 120 SMQDCSMETE DLATKELCEG DGPFEYNGKN FRELTIKDFD GSYFKTIEDA EKFYEIYSAA 180 LGFRLRRLKC DRGLNGTILR RVWCCSKQGQ KNKPKCEVRV SSNKGRPPRK SMREKCLAAF 240 GVRYSKEIDA YYVKSFTTEH SHDLPKPNKV QSLLSHCVSK KLDLAHAVAM RKDKESIKTS 300 AAYENRPSGG NESVGLTKEL DLAHAVAIRK AKETVKTPAA SEYMVDPADE WERGWQLMVE 360 TYGLQDNPWI GMMYGRRNRW AEAFFKGHFF GGMSSMQRCQ GIHRNLNNGI GKYDKLYEYI 420 PRVDKSLRKM RNDVSKDDFN CEYSKPVIIT HMRSLEQQIA DIFTHDIYLL IMHQIDWERK 480 YIISRSKPHG DGKVFNLTQY DLPHRHWTVN VSNMRFLCSC KLFQSDGIPC GHIFSVMKAE 540 LIMKLPDSLV LKRWTVEANT HVGKPDRGLQ MERYASLTSE ISKICFRASM TEEGTKKMKS 600 EIAKLAALAH DHSESQTQSI LKTLIHRHQL HVGSDAHSFS GFSVGINADQ YARSLPPGEF 660 RTYFY

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MRKNRSLPSP IIQKLQRLQR NREQEVAKKE EDRASSVWAV GLSQQSRFSN GTAEHHIFGT  60
LHFCEHISHP NQMRSKRERS FVPVCNGDQT RKLVYAMSSG SLIHNNESVV EVESAEEDDS  120
SMQDCSMETE DLATKELCEG DGPFEYNGKN FRELTIKDFD GSYFKTIEDA EKFYEIYSAA  180
LGFRLRRLKC DRGLNGTILR RVWCCSKQGQ KNKPKCEVRV SSNKGRPPRK SMREKCLAAF  240
GVRYSKEIDA YYVKSFTTEH SHDLPKPNKV QSLLSHCVSK KLDLAHAVAM RKDKESIKTS  300
AAYENRPSGG NESVGLTKEL DLAHAVAIRK AKETVKTPAA SEYMVDPADE WERGWQLMVE  360
TYGLQDNPWI GMMYGRRNRW AEAFFKGHFF GGMSSMQRCQ GIHRNLNNGI GKYDKLYEYI  420
PRVDKSLRKM RNDVSKDDFN CEYSKPVIIT HMRSLEQQIA DIFTHDIYLL IMHQIDWERK  480
YIISRSKPHG DGKVFNLTQY DLPHRHWTVN VSNMRFLCSC KLFQSDGIPC GHIFSVMKAE  540
LIMKLPDSLV LKRWTVEANT HVGKPDRGLQ MERYASLTSE ISKICFRASM TEEGTKKMKS  600
EIAKLAALAH DHSESQTQSI LKTLIHRHQL HVGSDAHSFS GFSVGINADQ YARSLPPGEF  660
RTYFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-26	FAR1 family protein