PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G08747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | Whirly | ||||||||
Protein Properties | Length: 227aa MW: 25293.2 Da PI: 10.2391 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 188.3 | 1.3e-58 | 53 | 187 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 s+yk+kaal++ +v+ptf++ldsg+l+++r+G+++l++++a++erkyd ek+q falsatev++l++l++k+sce+fhdp++++s++G+vrk+l+++P Ro02_G08747 53 SIYKGKAALSLTPVLPTFTKLDSGSLVVDRRGSVMLKFMPAIGERKYDSEKRQLFALSATEVGSLISLGPKDSCELFHDPSMQSSKSGEVRKSLSIKP 150 7************************************************************************************************* PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 ++dG +f++l+v n+l+k+ esfsvPv+ aefav++++ Ro02_G08747 151 HADG--YFISLTVVNNLLKTRESFSVPVTTAEFAVIKTA 187 ***5..9*****************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MMKLLRLFSS RNQLSKRHAL SLDAFTQSTS FSTARQNFSA KGRIGDQVYA PFSIYKGKAA 60 LSLTPVLPTF TKLDSGSLVV DRRGSVMLKF MPAIGERKYD SEKRQLFALS ATEVGSLISL 120 GPKDSCELFH DPSMQSSKSG EVRKSLSIKP HADGYFISLT VVNNLLKTRE SFSVPVTTAE 180 FAVIKTACSF ALPHIMGWDR LTNKVPRGIE VHESKMVEPQ LLDEWER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 9e-88 | Whirly family protein |