PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G08746

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 400aa MW: 45500.4 Da PI: 7.3311

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G08746	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.6	2.5e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + Ro02_G08746 8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN- 103 69**************************.99**********963433332556*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++g++ktLvfy+grap+g+ktdW+mheyrle Ro02_G08746 104 TYKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 8999**************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDGD DPQGNLSTED GWVICRVFKK KNLFKVNNEG GSSSMNSSDH 180 HHHQQLTMST NQLQARSFMH AHSSRSDTNQ YLLRQQAFEL NRPHDHDQDQ DQLPPSLHYA 240 HLNLQPPPQY SLFHSQALNI PTSSHKTLAA YNDYSSLPSD SSPGHGMVKQ LMTNPRDCES 300 AGSESLRYQA CEPGLEVNGS TCEPNQQAMV NAGGRSSDDQ GMSEWAMLDR LVTSHLGNED 360 STSKAAGARY DQDGSGSSTV NQINQQLPLR GEMDFWGYAK

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MATSSGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMEVI REVDLNKMEP WELQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYRGR  120
APHGQKTDWI MHEYRLEDGD DPQGNLSTED GWVICRVFKK KNLFKVNNEG GSSSMNSSDH  180
HHHQQLTMST NQLQARSFMH AHSSRSDTNQ YLLRQQAFEL NRPHDHDQDQ DQLPPSLHYA  240
HLNLQPPPQY SLFHSQALNI PTSSHKTLAA YNDYSSLPSD SSPGHGMVKQ LMTNPRDCES  300
AGSESLRYQA CEPGLEVNGS TCEPNQQAMV NAGGRSSDDQ GMSEWAMLDR LVTSHLGNED  360
STSKAAGARY DQDGSGSSTV NQINQQLPLR GEMDFWGYAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-136	NAC family protein