PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G07025
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 116aa    MW: 12520.2 Da    PI: 9.9037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G07025genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-141255245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 +i ++  r vtfs+Rr+g++KKA+ L  L +  +a++++s+tg+
  Ro02_G07025 12 PITDYQPRMVTFSRRRTGLFKKAKKLTYLSGSSIAIVVLSETGQ 55
                 799999************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MGTGKKKIDI EPITDYQPRM VTFSRRRTGL FKKAKKLTYL SGSSIAIVVL SETGQPYIHG  60
SPSLLDRFLS STATTTTAAG SSTATVATGS FVDKFRASMN SGSQACNDVE ELDRDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-16M-type_MADS family protein