PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G05470

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 291aa MW: 32564.3 Da PI: 7.0361

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G05470	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	9.6e-20	20	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G ++W++I++ ++ gR++k+c++rw + Ro02_G05470 20 KGPWSPEEDDLLRKLVQRHGARNWTLISKSIP-GRSGKSCRLRWCNQ 65 79****************************.*********985 PP
2	Myb_DNA-binding	54.1	3.6e-17	74	116	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++++a+ ++G++ W+tIar ++ gRt++ +k+ w++ Ro02_G05470 74 AFTPEEDEIIAEAHGKYGNK-WATIARLLN-GRTDNAIKNQWNST 116 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MDSSAIESVQ QQQRDLDRVK GPWSPEEDDL LRKLVQRHGA RNWTLISKSI PGRSGKSCRL 60 RWCNQLSPEV EHRAFTPEED EIIAEAHGKY GNKWATIARL LNGRTDNAIK NQWNSTLKRK 120 YSSMAEDGGA TIDEQHLRPE KKSASGRGYS PTSPSGSDVS DSGVVPAISS SQLFRPVAIA 180 VGEMLRNESP PSQNDNMEPS TLLTLSLPGG YANELASHES FTCREERTAS LQQPENENKT 240 MSFGPEFMSV MQEMIRKEVR NYMDDMNGQT AERIAYTDRA VARSLCKSRA R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-78	MYB family protein