PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04535
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 262aa    MW: 29325.6 Da    PI: 7.5973
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04535genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-15120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+++++++ ++lG+g+W+ I+++   +Rt+ q+ s+ q+y
      Ro02_G04535 120 AWSEEEHLRFLEGLEKLGKGDWRGISKHYVATRTPAQIASHAQNY 164
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGRKCSYCGN MGHNSRTCKT NTSEMQLKLN ERETGPNSVD DLSSYSSSSS SFSTFVWNMM  60
SLSSSPSSVA YSSTESSRLI TSCFIAHEIE KIVMENNLDI GHQDVSHIDN VAQETNKGVA  120
WSEEEHLRFL EGLEKLGKGD WRGISKHYVA TRTPAQIASH AQNYFLRRQD TTTTLNKRTS  180
RRRGPSLFDV GKHQPSVDFN VSSPPNTEAA LDWKLGTEKF GDQPSQSLDL QFDKPTPSSS  240
ANWALFAHIL CNRFGIRPYV PF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.21e-25MYB_related family protein