PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04519

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 965aa MW: 107887 Da PI: 5.4208

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04519	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	29.7	1.3e-09	936	957	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDg++WrKYG+K+vk+s++pr Ro02_G04519 936 LDDGFKWRKYGKKMVKNSPNPR 957 59*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MKPGRRSGGG GRSSFSDKKL NEFRSRLASS NDLDNSSTVD DIVDHLRSGY PDYERLKRQV 60 FKRFVLQTLA SPSFKRSKPQ PLMSDSSDEL ELAQTNSNRR RKRARNEREH KLQQIEDAHI 120 RRIRQSNGDG PSSTSASDED DDEEDEASTS EDAIYGEKLE PKFDLMKSML RESYTEPKSA 180 GKSKAAEQQK EKNLEMDIPG REKVKLLTGS RGPRPETVPN KAESEAKSSI SRGVEVKRNE 240 GPKFSDLGGM QKVLEELNKE VIRPLRRPWL PQWLGVKPMS GILLCGPPGC GKTTLAHAIA 300 NETGIPFYKI SATEVVSGVS GASEENIRDL FSKAYRTAPS IVFIDEIDAI ASKRENMQRE 360 MEKRMVTQLM TCMDQSHRPV EAADANSDSQ SSDQRSAYVL VIGATNRPDA VDPALRRPGR 420 FGREIVLGVP DENSRLEILS VLTRKLKLEG SFDLLKIARS TPGYVGADLA ELADRAGNIA 480 MNRIFDEIDS TIEECNEELC RQPEEMEKYA ISMADFEEAV QVVQPSSKRE GFSAIPNVKW 540 ENVGGLDLLR KEFERYIVRR IKHPENYEKF GVNSETGFLL YGPPGCGKTL IAKAVANEAG 600 ANFIYIKGPE LLNKYVGESE LAVRTLFTRA RTCSPCILFF DEVDALTTRR GKEGGWVVER 660 LLNQLLIELD GADQRRGVFV VGATNRPDVM DRAFLRPGRF GKLIYVSPPN TDERGLILKA 720 IGRKYPIDAS VDLGEIGKWK ACENFSGADL AALMDEAAMA ALEEKETSIE SFDASSWTIK 780 ETHFQPALAK IIPSVTERLP NLMLTSKTET AGQGGYPMNF EHTSQHCDYL NGLVLVDESR 840 NSTQMSNSNF TRSVQTPEND FSDQPNFDEY LMFGHWLDED QDYVASGSTQ NSVNDDSGGS 900 SSQFGGSSYN ENGSVTHRQE VRERVAFKMK SEVEILDDGF KWRKYGKKMV KNSPNPRYEL 960 LQVFI

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MKPGRRSGGG GRSSFSDKKL NEFRSRLASS NDLDNSSTVD DIVDHLRSGY PDYERLKRQV  60
FKRFVLQTLA SPSFKRSKPQ PLMSDSSDEL ELAQTNSNRR RKRARNEREH KLQQIEDAHI  120
RRIRQSNGDG PSSTSASDED DDEEDEASTS EDAIYGEKLE PKFDLMKSML RESYTEPKSA  180
GKSKAAEQQK EKNLEMDIPG REKVKLLTGS RGPRPETVPN KAESEAKSSI SRGVEVKRNE  240
GPKFSDLGGM QKVLEELNKE VIRPLRRPWL PQWLGVKPMS GILLCGPPGC GKTTLAHAIA  300
NETGIPFYKI SATEVVSGVS GASEENIRDL FSKAYRTAPS IVFIDEIDAI ASKRENMQRE  360
MEKRMVTQLM TCMDQSHRPV EAADANSDSQ SSDQRSAYVL VIGATNRPDA VDPALRRPGR  420
FGREIVLGVP DENSRLEILS VLTRKLKLEG SFDLLKIARS TPGYVGADLA ELADRAGNIA  480
MNRIFDEIDS TIEECNEELC RQPEEMEKYA ISMADFEEAV QVVQPSSKRE GFSAIPNVKW  540
ENVGGLDLLR KEFERYIVRR IKHPENYEKF GVNSETGFLL YGPPGCGKTL IAKAVANEAG  600
ANFIYIKGPE LLNKYVGESE LAVRTLFTRA RTCSPCILFF DEVDALTTRR GKEGGWVVER  660
LLNQLLIELD GADQRRGVFV VGATNRPDVM DRAFLRPGRF GKLIYVSPPN TDERGLILKA  720
IGRKYPIDAS VDLGEIGKWK ACENFSGADL AALMDEAAMA ALEEKETSIE SFDASSWTIK  780
ETHFQPALAK IIPSVTERLP NLMLTSKTET AGQGGYPMNF EHTSQHCDYL NGLVLVDESR  840
NSTQMSNSNF TRSVQTPEND FSDQPNFDEY LMFGHWLDED QDYVASGSTQ NSVNDDSGGS  900
SSQFGGSSYN ENGSVTHRQE VRERVAFKMK SEVEILDDGF KWRKYGKKMV KNSPNPRYEL  960
LQVFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	8e-15	WRKY family protein