PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02512

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 585aa MW: 65956.8 Da PI: 8.3633

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02512	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36	1.6e-11	535	583	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+ E++ l +v+++G+g+Wk I + + Rt+ ++k++w++ Ro02_G02512 535 KRWSLHEEDALRTGVQKYGKGNWKFILDMYRdifEERTEVDLKDKWRNM 583 59*********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MREEKTRLGR NPLDRDAKKL PSPLGIGRSI ALRNPKSQSP RLNFPILVAV LMDSDVDVWR 60 WVLELLLRDR ENESIAKRVL AVAPFSKQDW RLKKTVLLRT IECQIYDCAS VTETILEMLE 120 SIEVLDRGQG FPTTNSMRAA YCAVATECTV KFLVCLRGEP SGKYMEAVDR IWRGRVRVLE 180 ESERSELVSG ELKERRDEVE AGIWDMNVSK KLSRMNTRND ALRLVAAYVK EAFARMGPPF 240 IISVMRLNMA KESFGSESDQ VAVENGGNVG DGCEMEVQIA NKADLGDGTE LEVAIANRGV 300 LSFEPATKEK EISRNKALRR KHGPVKIRDA ENVGTDTSDG IDYYVSSAEV RKVQEELKSR 360 VMALQALVTD PLPYALHVSG IVRSELEMRS LNHVSGEVGA SNPSVEKNTE PDHSNNGNHG 420 NLISSHQNDV PQPTGKENDA PNLFVDKGKG TEYVQSGDLN PGDPCCSNQN RVSRQGFMER 480 NSNARTYEWD DSLGMSPEGA MNGKGRLHLP SPKRNAVSPL KKYEDKRFAK RRKVKRWSLH 540 EEDALRTGVQ KYGKGNWKFI LDMYRDIFEE RTEVDLKDKW RNMTK

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MREEKTRLGR NPLDRDAKKL PSPLGIGRSI ALRNPKSQSP RLNFPILVAV LMDSDVDVWR  60
WVLELLLRDR ENESIAKRVL AVAPFSKQDW RLKKTVLLRT IECQIYDCAS VTETILEMLE  120
SIEVLDRGQG FPTTNSMRAA YCAVATECTV KFLVCLRGEP SGKYMEAVDR IWRGRVRVLE  180
ESERSELVSG ELKERRDEVE AGIWDMNVSK KLSRMNTRND ALRLVAAYVK EAFARMGPPF  240
IISVMRLNMA KESFGSESDQ VAVENGGNVG DGCEMEVQIA NKADLGDGTE LEVAIANRGV  300
LSFEPATKEK EISRNKALRR KHGPVKIRDA ENVGTDTSDG IDYYVSSAEV RKVQEELKSR  360
VMALQALVTD PLPYALHVSG IVRSELEMRS LNHVSGEVGA SNPSVEKNTE PDHSNNGNHG  420
NLISSHQNDV PQPTGKENDA PNLFVDKGKG TEYVQSGDLN PGDPCCSNQN RVSRQGFMER  480
NSNARTYEWD DSLGMSPEGA MNGKGRLHLP SPKRNAVSPL KKYEDKRFAK RRKVKRWSLH  540
EEDALRTGVQ KYGKGNWKFI LDMYRDIFEE RTEVDLKDKW RNMTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-18	MYB_related family protein