PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02437
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 513aa    MW: 57462.7 Da    PI: 9.272
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02437genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-1817103599
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +  s  l+s rl +p +f+++++g +  s  ++l  +sg+ W+v l    + g  ++  GW  Fv+++ L+ gDf++F++dg+  f  +v++f++
  Ro02_G02437  17 F--SADLSSERLKIPERFMSHMEGRT--SGLVVLSGPSGNAWNVHL--IEQNGDLFFHYGWPAFVRDHSLECGDFLIFRYDGELHF--TVQIFDQ 103
                  4..77889999********7778774..448***************..88888899************************996666..9999997 PP
2B346.37.6e-152122931296
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   s  l +p kf  +h   ++++++++l +++g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l ++ ef  +v++
  Ro02_G02437 212 GSYTLNIPYKFSVAHL--PNCKVKIVLLNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELLRECEF--RVHI 293
                  456799*****99996..45999***************954566666799************************999999..5544 PP
3B348.61.5e-15401494197
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+k++++ + + s  l +p +f +eh  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l+g  ++e++v+
  Ro02_G02437 401 FVKIMKKFNISGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNNVNFGDICIFELVG--KREMRVH 492
                  778888888888889***********533....3468***************5544444379999*********************998..5556777 PP

                  EE CS
           B3  96 vf 97 
                  + 
  Ro02_G02437 493 IS 494
                  65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MAEEALNARR PHFFAFFSAD LSSERLKIPE RFMSHMEGRT SGLVVLSGPS GNAWNVHLIE  60
QNGDLFFHYG WPAFVRDHSL ECGDFLIFRY DGELHFTVQI FDQTACEKEA AFHCECGQNS  120
SYFENFMGRK RARDEGCGLD RVLCGESTSS QQTKPYENPG LDVILYKAKA AIQNNLNDRV  180
CMQISPAHEV AQSFSSSNPY FVRIMKSFNI SGSYTLNIPY KFSVAHLPNC KVKIVLLNLK  240
GESWTVNSVP TTRVHTSHTL CGGWMAFVRY NDIKLGDICI FELLRECEFR VHIQSGETSS  300
RLCAGLALKG LSKKVKGNSP KVHTKSLRKI EISDTRKHGS TSKSIAKGAL CSQSKAASKK  360
LANRRKKGVE DELGSKAGLR MRLTLVEEKA ARSFTSCFPN FVKIMKKFNI SGSYTLKIPY  420
QFSTEHLPNY KTEIVLRNSK GECWTVNSVP DSKGRVVHTF CGGWMAFVRG NNVNFGDICI  480
FELVGKREMR VHISGADKNG FDHQGGEAMT NAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-23B3 family protein