PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02393

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 518aa MW: 54078.4 Da PI: 8.9616

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02393	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ro02_G02393 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	15.7	4.3e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Ro02_G02393 132 WKCERCSKKYAVQSDWKAHMKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MGELDNSSSL VGSTASGEAT FSEAPAKKKR NLPGMPDPEA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYVCP EASCVHHNPT RALGDLTGIK 120 KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR DSFITHRAFC 180 DALAEESAKA QTLGSSQLGN PNPNPAKAVV VASPPPPPLT PSNNVVSPAL SIQSSEFPEN 240 PVGLSPPPPA TTCLTTTTTA ISTTATTTTS TGNCSNSSSS VFASIFAPSS TVSQTAAAAN 300 SSSFSNLVSS SAIPSVSAVE PTSLSLSTSL YLSNNGSSLF PTSDQQDHRH YTTSPQAPAM 360 SATALLQKAA QMGAGASSGS FLRGFGLSTS SSPPQPQDLQ WNNNNHSQHN KRDGSGGAAA 420 TVAAGLGLEG ASTVLLTDLM MGPPLPFGNH HQPMTRDLLG LGIGGNGGGA SSAGLSALLN 480 SFGGGGGSFA TFARGSGESS WEGAQERKPD GAKGPALL

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MGELDNSSSL VGSTASGEAT FSEAPAKKKR NLPGMPDPEA EVIALSPKTL MATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYVCP EASCVHHNPT RALGDLTGIK  120
KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR DSFITHRAFC  180
DALAEESAKA QTLGSSQLGN PNPNPAKAVV VASPPPPPLT PSNNVVSPAL SIQSSEFPEN  240
PVGLSPPPPA TTCLTTTTTA ISTTATTTTS TGNCSNSSSS VFASIFAPSS TVSQTAAAAN  300
SSSFSNLVSS SAIPSVSAVE PTSLSLSTSL YLSNNGSSLF PTSDQQDHRH YTTSPQAPAM  360
SATALLQKAA QMGAGASSGS FLRGFGLSTS SSPPQPQDLQ WNNNNHSQHN KRDGSGGAAA  420
TVAAGLGLEG ASTVLLTDLM MGPPLPFGNH HQPMTRDLLG LGIGGNGGGA SSAGLSALLN  480
SFGGGGGSFA TFARGSGESS WEGAQERKPD GAKGPALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-115	C2H2 family protein