PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02359
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 343aa    MW: 37450.8 Da    PI: 7.5653
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02359genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.51.2e-31107164260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  ++vrY+eClkNhAa++Gg+++DGCgEfmp  geegt +alkCaAC+CHRnFHR+ev+ e
  Ro02_G02359 107 SNVRYRECLKNHAANIGGNVFDGCGEFMPC-GEEGTLEALKCAACECHRNFHRKEVDGE 164
                  689**************************9.999*********************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MDFRTQDNEM RTSGSALSYG GAHLTKESSG GGEKRRLGNI HNGTPTVLSA AYTSTHQTLD  60
HHQPHTLHVH PVPLPLKDPD PDRVVAPGGV VSGGPKSKTP SSTGTTSNVR YRECLKNHAA  120
NIGGNVFDGC GEFMPCGEEG TLEALKCAAC ECHRNFHRKE VDGETTPFGP GSRSRSIMLS  180
PLQLPPPLPS PSSALHHHHH RHHHQKFSIV QPMSVAFGGN GGGTESSSED LNVFDNVDGG  240
GMAVVPPFGL SKKRFRTKFT PEQKERMVEF AERVGWRIQK QDEEDVDKFC AEVGVKRQVL  300
RVWMHNNKNT VKKMQHDITT TTSQLALDNV EAADHHQGGT TDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.19e-57ZF-HD family protein