PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ro02_G01485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 298aa MW: 34289.4 Da PI: 10.1134 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.6e-16 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++gi+KK +E+ +LCd+++a ii+s+ Ro02_G01485 10 FITNDSSRKSTFKKRKKGIIKKVSEITTLCDIKAAAIIYSP 50 89**************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence |
MARRKVKLSF ITNDSSRKST FKKRKKGIIK KVSEITTLCD IKAAAIIYSP YDSQPEVWPN 60 HTAAHSLLTR FQNMPEMEKS RKMVDQETYL KQRIAKVREQ IKKLQKENRE KEVTRVMYDC 120 LKGRTLKDLQ LRDLNDLGWV IDRHLREIEI RKRAIKEEEE DRKQDLLNQV KAAKMETAAA 180 ERGAGVMRMS AYEKGGSSSS QVQVQVQPQQ LAAMEAQTLE QLQMMQIAAN RQQAHQNPWF 240 VDIMNPPPPP AGLPDQTMGF MHPPPPPPAP FGDYNSLNAM WSNNFHVYAR SVETTEVQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RRKVKLSFITNDSSRKSTFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-42 | M-type_MADS family protein |