PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G01376
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 407aa    MW: 45260.7 Da    PI: 6.5269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G01376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-1978126355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Ro02_G01376  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 126
                  9*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MCGGAIIADF IPRNRGRRVS ASEIWPNSPF AKLNPDNFFH SNLSPPTHND SPPSKKSQPT  60
SDGVQEQKSA KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE  120
ARKIRGKKAK VNFPNEDDDY PHQTYLSNPN PPRSQPQTGN FTNNQIPKGF DLGFGYDLNE  180
SVTFPSNSNG FYSMGVGNTD PIVVSGEENS GSGSEGNLSS TGLLGCNQNG KEKEESIEGN  240
AIAAVEEDEV QKLSEELMAY ENYMKFYQIP YLDGQSIAPT NPTAQESMVG DLWSFDDENE  300
NVSTSLSSQS LICKLHLSSG LRTMEPLITS GAAGFESSAS FPCFIVGAYR FRLYKLYKLV  360
RLLSYSSVSQ LERLCPTSVC LSRLFILIIG PCAIFARDMD LDWVPKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-35ERF family protein