PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00716

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CPP

Protein Properties

Length: 516aa MW: 56435.2 Da PI: 7.7419

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00716	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.1	2e-14	58	96	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k CnCk+s+Clk+YCeCfaag +C C+C++C+N+ + Ro02_G00716 58 KQKLCNCKNSRCLKLYCECFAAGIYCRG-CNCSNCHNNVD 96 7899**********************.******986 PP
2	TCR	50.3	4.7e-16	139	177	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC C+ks ClkkYCeCf+a++ Cse+CkC dCkN Ro02_G00716 139 KHNKGCACRKSGCLKKYCECFQANVLCSENCKCMDCKNF 177 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MEIAGKLASV RDGFRWRLEF RNGSSLSEIN GAERNGFEKH ESPKPRARSE AKESTPKKQK 60 LCNCKNSRCL KLYCECFAAG IYCRGCNCSN CHNNVDNEAA RQDAVGAILE RNPKAFRPKI 120 ASSPHESRDS WEDAGEVQKH NKGCACRKSG CLKKYCECFQ ANVLCSENCK CMDCKNFDGS 180 EERRAIFHED HNTIANVQQA NAAISGAIGS SGFGPLVSRQ RPSDELFSGI GAKDQSVHLI 240 TQAQQENHLR PPMASSSLLP VPIFGTPNAA VSGSSKPTYR SMLANIIQPE NIKDLCSRLV 300 VVSAEAAKAL AENRQKETID KTTTGSAYQE GKESKREHEF QNCVHDGHLG VNQADKDGSS 360 GSVSDGGDVQ NSRPMSPGTL ALMCDEQDKM FMAAGPQNEI TTNSQSTTQN SSQEIGCTEV 420 YEEQERIVLT GFRDFLNLLI TRGSIKETMC SPVAKREREI QKDSVEGGTP KKPRGEKETY 480 SNDIGKFPAS TNGKVLQSVV TYVSEVGLPL KNNNGK

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MEIAGKLASV RDGFRWRLEF RNGSSLSEIN GAERNGFEKH ESPKPRARSE AKESTPKKQK  60
LCNCKNSRCL KLYCECFAAG IYCRGCNCSN CHNNVDNEAA RQDAVGAILE RNPKAFRPKI  120
ASSPHESRDS WEDAGEVQKH NKGCACRKSG CLKKYCECFQ ANVLCSENCK CMDCKNFDGS  180
EERRAIFHED HNTIANVQQA NAAISGAIGS SGFGPLVSRQ RPSDELFSGI GAKDQSVHLI  240
TQAQQENHLR PPMASSSLLP VPIFGTPNAA VSGSSKPTYR SMLANIIQPE NIKDLCSRLV  300
VVSAEAAKAL AENRQKETID KTTTGSAYQE GKESKREHEF QNCVHDGHLG VNQADKDGSS  360
GSVSDGGDVQ NSRPMSPGTL ALMCDEQDKM FMAAGPQNEI TTNSQSTTQN SSQEIGCTEV  420
YEEQERIVLT GFRDFLNLLI TRGSIKETMC SPVAKREREI QKDSVEGGTP KKPRGEKETY  480
SNDIGKFPAS TNGKVLQSVV TYVSEVGLPL KNNNGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-118	CPP family protein