PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00676
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 890aa    MW: 98257.7 Da    PI: 6.8273
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00676genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65e-1970128357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ro02_G00676  70 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 128
                  5679*****************************************************97 PP
2START182.32.6e-572154232205
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+s+g  g+++l +++
  Ro02_G00676 215 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRNCRSVDVLNVLSTGngGTIELLYMQ 311
                  7899******************************************************.9999999999***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  
  Ro02_G00676 312 LYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLL 409
                  ****************************************9988899*************************************************** PP

                  HHHHHHHHTXXXXX CS
        START 192 gaktwvatlqrqce 205
                  ++kt++a+l+++++
  Ro02_G00676 410 AQKTTMAALRNLRQ 423
                  **********9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    
MEDLPCVSKL NGFMQKKIIN EPVGGHLRPT QERRSNKLRE KRSFKMAVTS SSSCKELGGG  60
GMKMQMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI EPKQIKVWFQ  120
NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF RQQSQNTTLA  180
TTDTSCESVV TSGQHHLTPP QHPPRDASPA GLLSIAEETL AEFLSKATGT AVEWVQLPGM  240
KPGPDSIGIV AISHGCTGVA ARACGLVGLE PTRVSEILKD RPSWFRNCRS VDVLNVLSTG  300
NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV CERSLNNTQN GPSMPPVQNF  360
VRAEMLPSGY LIRPCEGGGS IIHIVDHMDL EPWSVPEVLR PLYESSTLLA QKTTMAALRN  420
LRQISQEVSQ PNSNGWGRRP AALRALGQRL SKGFNEAVNG FTDEGWSILE SDGVDDVTLL  480
ANSSPGKMMG ANLYGNGVPS MSNAVLCAKA SMLLQNVPPA ILLRFLREHR SEWADRSIDA  540
YSAAAIKAGP CGMLGSRAGS FGDQVILPLA HTIEHEEFME VIKIENMGHY RDDMMMPAAD  600
IFLLQLCSGV DENAVGTCAE LVFAPIDASF SDDAPILPSG FRIIPLDSHM DAPSPNRTLD  660
LASALEVGPT GNRSSGDNAG HCGNTKSVMT IAFQFAFEIH LQENVASMAR QYIRSIIASV  720
QRVALALSPS RFGSHAGFRP PPGTPEAQTL AGWICQSYRC YLGVELLKCE GSESILKSLW  780
HHSDAILCCS LKALPVFTFA NQAGLDMLET TLVALQDITL EKIFDDNGRK ILFTEFPQIM  840
QQGFMCLQGG ICMSSMGRPI SYERAVAWKV LNEEETAHCI CFMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein