PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G00623

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 1226aa MW: 136504 Da PI: 9.0711

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G00623	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.1	2.4e-16	901	990	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp +f++++ + ++++ +tl de+g+++ + +++++ l++GW++F+ a+gL +gD +vF+l++ ++f +v ++r Ro02_G00623 901 FVKPMLQSHVTGGFWLGLPLPFCRKYL-P-KGDTIVTLIDEEGEKYPTVY--LGHKSG--LSGGWRGFAIAHGLVDGDALVFQLIRPTSF--KVYIIR 990 89**********************4.2.35679***********..777777..9**********************98888..777765 PP
2	B3	44.7	2.4e-14	1118	1196	2	86
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +k++++s+v+ +l l +f++++ k ++ +tl de+g++++ + rk++ l++GWk+F+ a++L +gD vvF+l++ Ro02_G00623 1118 VKTMLQSHVTGGFWLGLQVQFCKDYLPK--KDEVMTLVDEDGNKYKTIYLARKTG----LSGGWKGFAVAHDLVDGDAVVFQLIK 1196 699********************534..44589**********656665....*********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1226 aa Download sequence
MWGFGGRYYW GRKERSDGIE GIVVVFAWMS SEERHLNNYV QLYSSLGWNS LVCHSQFLNM 60 FFPEKATTLA TDILNELVQE LKIKPCPVVF ASFSGGPKAC MYQVLQIIEG ICESKLNLDE 120 CRLVRDCISG HIYDSSPVDF TSDLGTKFVL HPTVLKMSHP PRLASWVAHG IASSLDALFL 180 NRFESQRAEY WQTLYSSVGM KAPFLILCSE NDDLAPYQII CNFAQRLREL GADVKLIKWN 240 GSPHVGHYRH YPIDYKAAVT ELLGKAAGVY AQRIRQLEGE SFGVQAEHDD SDEPMSSLRK 300 AAGASNGFRG VILASSDDLL PTSTEYYGVG SVQDEGLIHL PNATMNAHGV LGQVLFDVCV 360 PKNVENWDIK SSSSLNGNGR SFSFRRRQAP FNPISKDVLC FHTGEKQNMR VVVTGASGFL 420 GGRLCHELLK QGHSVRALVR PTSDLSALPP QSSNGDGSLE LVYGDVTDYQ SLLSAFSGCG 480 VVLHAAALVE PWLPDPSNFF LVNVGGLKNV LRAVRETKTV EKVIYTSSFF ALGSTDGHVA 540 DETQFHHERF FCTEYEKSKA AADKIALQAA QQEGLPILIL YPGVIYGPGK LTAGNVVARL 600 IIERFNGRLP GYIGSGTDKY SFSHVDDVVD GHIRAMNKGR IGERYLLTGE NASFKHVFDI 660 SAVLTQTRRP KFNIPLWLIE VYGWVSILFA RITGKLPLIS PPTVYVLRHQ WAYSCEKAKQ 720 ELDYTTIACE CTKDGEPPES VGIGVGVALA MFSKPAVVLV LDNLSHSATA FSPIAMAKPK 780 VSYEEIRKQR MEENRKRMEA LNLPQLSQGF RTSSAPKPSP MKRQKPRIVE KQTVVVRRSA 840 RVASQPSPVY REVEVKIPRS YGISKSRDFS NRVYASEYAR AEATEKAEEL ESGLGSDYPT 900 FVKPMLQSHV TGGFWLGLPL PFCRKYLPKG DTIVTLIDEE GEKYPTVYLG HKSGLSGGWR 960 GFAIAHGLVD GDALVFQLIR PTSFKVYIIR MVSYEESRKK RLEENRKRIE ALNLPHLAQA 1020 LRASSSPKPS PMKRVKPKVV KQMVVVRRSS RVANLPTPVY KEMTVVERVM IPRRYSGSTS 1080 KHRDLSNRVY ASYEDRMEAM AKAEKLESDL GADFPTLVKT MLQSHVTGGF WLGLQVQFCK 1140 DYLPKKDEVM TLVDEDGNKY KTIYLARKTG LSGGWKGFAV AHDLVDGDAV VFQLIKPTTM 1200 KGGKKGLNRL RTFGIDDFIS IPFCNE

Sequence ? help Back to Top

Protein Sequence Length: 1226 aa Download sequence

MWGFGGRYYW GRKERSDGIE GIVVVFAWMS SEERHLNNYV QLYSSLGWNS LVCHSQFLNM  60
FFPEKATTLA TDILNELVQE LKIKPCPVVF ASFSGGPKAC MYQVLQIIEG ICESKLNLDE  120
CRLVRDCISG HIYDSSPVDF TSDLGTKFVL HPTVLKMSHP PRLASWVAHG IASSLDALFL  180
NRFESQRAEY WQTLYSSVGM KAPFLILCSE NDDLAPYQII CNFAQRLREL GADVKLIKWN  240
GSPHVGHYRH YPIDYKAAVT ELLGKAAGVY AQRIRQLEGE SFGVQAEHDD SDEPMSSLRK  300
AAGASNGFRG VILASSDDLL PTSTEYYGVG SVQDEGLIHL PNATMNAHGV LGQVLFDVCV  360
PKNVENWDIK SSSSLNGNGR SFSFRRRQAP FNPISKDVLC FHTGEKQNMR VVVTGASGFL  420
GGRLCHELLK QGHSVRALVR PTSDLSALPP QSSNGDGSLE LVYGDVTDYQ SLLSAFSGCG  480
VVLHAAALVE PWLPDPSNFF LVNVGGLKNV LRAVRETKTV EKVIYTSSFF ALGSTDGHVA  540
DETQFHHERF FCTEYEKSKA AADKIALQAA QQEGLPILIL YPGVIYGPGK LTAGNVVARL  600
IIERFNGRLP GYIGSGTDKY SFSHVDDVVD GHIRAMNKGR IGERYLLTGE NASFKHVFDI  660
SAVLTQTRRP KFNIPLWLIE VYGWVSILFA RITGKLPLIS PPTVYVLRHQ WAYSCEKAKQ  720
ELDYTTIACE CTKDGEPPES VGIGVGVALA MFSKPAVVLV LDNLSHSATA FSPIAMAKPK  780
VSYEEIRKQR MEENRKRMEA LNLPQLSQGF RTSSAPKPSP MKRQKPRIVE KQTVVVRRSA  840
RVASQPSPVY REVEVKIPRS YGISKSRDFS NRVYASEYAR AEATEKAEEL ESGLGSDYPT  900
FVKPMLQSHV TGGFWLGLPL PFCRKYLPKG DTIVTLIDEE GEKYPTVYLG HKSGLSGGWR  960
GFAIAHGLVD GDALVFQLIR PTSFKVYIIR MVSYEESRKK RLEENRKRIE ALNLPHLAQA  1020
LRASSSPKPS PMKRVKPKVV KQMVVVRRSS RVANLPTPVY KEMTVVERVM IPRRYSGSTS  1080
KHRDLSNRVY ASYEDRMEAM AKAEKLESDL GADFPTLVKT MLQSHVTGGF WLGLQVQFCK  1140
DYLPKKDEVM TLVDEDGNKY KTIYLARKTG LSGGWKGFAV AHDLVDGDAV VFQLIKPTTM  1200
KGGKKGLNRL RTFGIDDFIS IPFCNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-65	B3 family protein