PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G00564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 33530.8 Da PI: 8.6366 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.4 | 8e-19 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + Ro02_G00564 15 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 60 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tI+r ++ gRt++ +k++w++ Ro02_G00564 69 PFTPEEDDAIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 111 89******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence |
MASSSTKKAA ADRIKGPWSP EEDEALQRLV QNYGPRNWSL ISKSIPGRSG KSCRLRWCNQ 60 LSPEVEHRPF TPEEDDAIIR AHARFGNKWA TISRLLNGRT DNAIKNHWNS TLKRKFLSMS 120 DDMTPEQPLK RSASVGAGTT VSGLYMNPGS PSGSDLSDSS LPGVIPPPSQ AFRHMTITRP 180 ITPPPEVSTL AVDPPTSLSL SLPGFNNCEG SNHQRSGSGS GSSWIDSPTP KVQPQPQDQD 240 DAAGVPCQEM GIDKQLFSAE LLDVMQDMIR KEVKNYMSGI EHKGMFMHTE AIRNAVVKRI 300 GITKVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 9e-78 | MYB family protein |