PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G30283
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 295aa    MW: 33844.9 Da    PI: 9.3488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G30283genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.8e-121802481689
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    +p +f++++ ++k+++ +l++ +     W+vk    ++ ++ ++++GW eF ++n+Lk+gD++vF+++++++
  Ro01_G30283 180 PHIPCTFVKDYIKIKKSTAKLQVLN---MLWSVKW--INNYCSSWFSQGWIEFERQNDLKVGDVCVFEMIKTDD 248
                  579999**99966666666666666...7899999..677777889**********************987644 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MYLSSPIFGP LLELGLLMRK TVMTAWRVLI FRYAGNSKFY VDIYGRHGCK KEFGMAARRS  60
ERPLEKGQGN EIHRTNASSK YVGNSTRHPK QNMDYQNLKG SADEKKTSQA GISIKSELID  120
IELETAIDID ESIRNMNARE TLCSQAQTYV TCFDRNLCDQ RNSGMNMKPA PAPTPTHPRP  180
HIPCTFVKDY IKIKKSTAKL QVLNMLWSVK WINNYCSSWF SQGWIEFERQ NDLKVGDVCV  240
FEMIKTDDVV MKMEASFAFL GLSKVANLPC SIRLRSNFFF PAKFLWPTSQ HNDDH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-11B3 family protein