PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G30225
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 273aa    MW: 30822 Da    PI: 9.616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G30225genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.1e-1911891596
                 -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3 15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 rl lp +fa++h  +++       +l+ ++g +W+v+++y++k ++  l +GW+ Fv++n+Lk+gD++vF l++r+ef  ++ v
  Ro01_G30225 11 RLDLPYEFAKRHliKLPVG---IAILRVSDGDTWSVRFKYDRKNSKARLLNGWSPFVRDNNLKVGDVCVFVLIDRNEF--LFEV 89
                 689*********7654433...478888************77777878888**********************99998..5555 PP
2B353.15.8e-17178270197
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ff v++ s++ +++++++p +f++++ +g  +++ +l++ed   +sW v+li   ++ +  +++GW  F+ ++ LkegD+++F+l++ ++f l+v+++
  Ro01_G30225 178 FFIVTLGSYHKEKSNVSVPASFVKSFiKGA-KQTLKLQVED---KSWPVNLIT-YGKHSAKFSGGWAAFATEHCLKEGDVCIFELMEMNDFLLKVHIL 270
                  67777789999999*********9996333.3444555555...9******54.344456799**********************9989999999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MCFHCLSVLL RLDLPYEFAK RHLIKLPVGI AILRVSDGDT WSVRFKYDRK NSKARLLNGW  60
SPFVRDNNLK VGDVCVFVLI DRNEFLFEVF FFPTIVAENC SFSPGHGRGA SVLVKEKRSP  120
IVKVEAELNM KCEIGVSRSI EVKKKIPKTN GQVTRKPCSF LTASSLEAAN KFVSENPFFI  180
VTLGSYHKEK SNVSVPASFV KSFIKGAKQT LKLQVEDKSW PVNLITYGKH SAKFSGGWAA  240
FATEHCLKEG DVCIFELMEM NDFLLKVHIL HVD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-19B3 family protein