PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G30224
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 477aa    MW: 53936.7 Da    PI: 9.9172
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G30224genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-158841799
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +pkkf+ ++g++   s  + l+ +sg +W+v+l  +++ +++++++GW eF +   L++g f+vF+++g+s+f   v +f++
  Ro01_G30224  8 KIPKKFVLKYGED--LSNSVCLKLPSGSEWQVEL--TRCNCKTWFGRGWPEFSRFCSLEVGTFIVFRYEGNSKF--DVCIFDT 84
                 59********977..8889***************..999999****************************9999..9999987 PP
2B348.51.6e-152563311896
                  --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  lp  f ++h  +++ +   ++l+ ++gr+W v+l  + + ++  ++ GW  Fvk+n+L++gD++vF l+++ +  l+v +
  Ro01_G30224 256 LPLGFSKRHlTKQPDG--NIILRVSDGRTWPVQL--TCREQKAQFEHGWLTFVKDNNLEVGDVCVFILIKDIKLLLRVFL 331
                  8999999996444444..7***************..555555669**********************9987444455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    
LTHSVVQKIP KKFVLKYGED LSNSVCLKLP SGSEWQVELT RCNCKTWFGR GWPEFSRFCS  60
LEVGTFIVFR YEGNSKFDVC IFDTSATEID YPLTMPNIKE VETRVKPPLV CPPLKKMRRS  120
WSGIAISENG NTQPYDTVVF EKPMTNRDSH CSKAEIKKED DFRAKKDGAG GSSSAERFLR  180
QTRNQQVLEK ARAFQRANAF KSENPTFLVA MLPSYIQSTL VSNPTNFYIF YVLSMLATKF  240
HNIVSSCISS FHFQPLPLGF SKRHLTKQPD GNIILRVSDG RTWPVQLTCR EQKAQFEHGW  300
LTFVKDNNLE VGDVCVFILI KDIKLLLRVF LFRTSQAENW FSPGPGKNTT KEGNGALSTA  360
RRGRKQLTIS DGAREFSSQT SPGENDFATK NDGGCLSSPQ RFQKQAPRKN LGRMKQLTTT  420
EKAIALQRAN AFKSDNPFFK MAMQPSHIHE NKVVSHLYTP CCGSMTSSTS SFLLEQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein