PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G30012

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 561aa MW: 63371.9 Da PI: 8.6823

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G30012	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.3	3.4e-05	1	24	33	56
HHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRakek 56 +A++l L+ +q+++W qN R+k++ Ro01_G30012 1 MARQLLLQPKQITYWIQNYRTKRR 24 599*******************98 PP
2	START	88.5	1.4e-28	146	294	62	206
HHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS START 62 veellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148 ++l+d+k qW++++ k+ tlev+ g +al+ + ae+ ++splvp R+ fvRy+rq ++ wv+vd + + + + +++ R + Ro01_G30012 146 NKILMDVK-QWSTMFGnivsKVRTLEVLAVGdnknfnEALHEIIAEFHLPSPLVPvREHHFVRYCRQYYEDLWVVVDADLKEIFQDS-LAKYYR---R 238 35566666.****999******999999***************************************5555555555.566666...9 PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 pSg+li+ +++g+skvtwve+++++ +++l+ +l+ ++ ak+wv+tl+rqce+ Ro01_G30012 239 PSGCLIQALPDGYSKVTWVENAEVDNEDVQNLYLPLIWCSI--WAKRWVSTLERQCER 294 *********************************8776..69*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MARQLLLQPK QITYWIQNYR TKRRAEFFRS ENDALKKEVA KLHIKLKGYE QAFANTTFWI 60 TTKGLDYKPQ VLDAGPNIEK GKSPLDFSEA FQQPRKDFLH TKDGQDLIAK LVFAAMEELV 120 MMAQAGAPLW ISAKDGGHPI QHDILNKILM DVKQWSTMFG NIVSKVRTLE VLAVGDNKNF 180 NEALHEIIAE FHLPSPLVPV REHHFVRYCR QYYEDLWVVV DADLKEIFQD SLAKYYRRPS 240 GCLIQALPDG YSKVTWVENA EVDNEDVQNL YLPLIWCSIW AKRWVSTLER QCERLVSSMA 300 TTHDPISLGV IYDDKGKRGL YNLARRMMLK FHSDISASAA NQWSTSLECP GSDEIQSMVK 360 VNMEDPGVPK GTIFSTVSSL WRLTSPRDVF EFLQNLQTQH PWDILAKGEV VEEIMRIITS 420 PNPGNYISML RIDGANSGTS KRLILQESCA NSIESYLVYT KINFFEMKAV LNGANPDSVA 480 LLPSGFAIIP NVAATKGVGG SHGTNTDGTV LTIAIQKVVH LGRNLKNFNK PLTEAKKRIR 540 AIITGITRAA LKDHQQLAGL Y

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MARQLLLQPK QITYWIQNYR TKRRAEFFRS ENDALKKEVA KLHIKLKGYE QAFANTTFWI  60
TTKGLDYKPQ VLDAGPNIEK GKSPLDFSEA FQQPRKDFLH TKDGQDLIAK LVFAAMEELV  120
MMAQAGAPLW ISAKDGGHPI QHDILNKILM DVKQWSTMFG NIVSKVRTLE VLAVGDNKNF  180
NEALHEIIAE FHLPSPLVPV REHHFVRYCR QYYEDLWVVV DADLKEIFQD SLAKYYRRPS  240
GCLIQALPDG YSKVTWVENA EVDNEDVQNL YLPLIWCSIW AKRWVSTLER QCERLVSSMA  300
TTHDPISLGV IYDDKGKRGL YNLARRMMLK FHSDISASAA NQWSTSLECP GSDEIQSMVK  360
VNMEDPGVPK GTIFSTVSSL WRLTSPRDVF EFLQNLQTQH PWDILAKGEV VEEIMRIITS  420
PNPGNYISML RIDGANSGTS KRLILQESCA NSIESYLVYT KINFFEMKAV LNGANPDSVA  480
LLPSGFAIIP NVAATKGVGG SHGTNTDGTV LTIAIQKVVH LGRNLKNFNK PLTEAKKRIR  540
AIITGITRAA LKDHQQLAGL Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	535	541	AKKRIRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-125	HD-ZIP family protein