PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G29780

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 401aa MW: 45799.3 Da PI: 8.0504

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G29780	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.8e-08	11	59	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +WT E+e l+ +v+++G g WktI + + + +++++w++ Ro01_G29780 11 KWTRKEEETLAAGVAKYGIGKWKTILQDSKfapclTPKPCDDLVNKWRN 59 8*************************99888855422233366666666 PP
2	Myb_DNA-binding	23.2	1.6e-07	104	132	2	30
SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIart 30 rWT eE+e l+ +v ++G+ Wk I + Ro01_G29780 104 SRWTVEEEEALAAGVVKYGMSKWKHIRED 132 59***********************9776 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MRALKRKQYK KWTRKEEETL AAGVAKYGIG KWKTILQDSK FAPCLTPKPC DDLVNKWRNL 60 TSRVSDEKLR TMSPKVKKIV TAHLDAKQNE SAFAEREERG ITGSRWTVEE EEALAAGVVK 120 YGMSKWKHIR EDPEFGPILG IHSCRSLVSK WRNLTDRVSE EKMRRMSYKV RKVVDAYLRN 180 KINDDDPASK AVEEETERIS EMEEDTEEVS RSCEVRNVVD DNPVEAAKDL NDVQNSDDPA 240 QAVKEKERVS KVAEDIESML VLLKEICGRC MAEDTNRVSS AAAPPEAVKE TEMISEMEDT 300 DRVSATAPEA VKETARISET AEDTKSMLVL LKQINNKHLS RAEQSSRTTT FKVLDKNLQL 360 KLATSDVFVL LFLFQFQANL RHHSNFAKIN KIRIQLMMTR C

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MRALKRKQYK KWTRKEEETL AAGVAKYGIG KWKTILQDSK FAPCLTPKPC DDLVNKWRNL  60
TSRVSDEKLR TMSPKVKKIV TAHLDAKQNE SAFAEREERG ITGSRWTVEE EEALAAGVVK  120
YGMSKWKHIR EDPEFGPILG IHSCRSLVSK WRNLTDRVSE EKMRRMSYKV RKVVDAYLRN  180
KINDDDPASK AVEEETERIS EMEEDTEEVS RSCEVRNVVD DNPVEAAKDL NDVQNSDDPA  240
QAVKEKERVS KVAEDIESML VLLKEICGRC MAEDTNRVSS AAAPPEAVKE TEMISEMEDT  300
DRVSATAPEA VKETARISET AEDTKSMLVL LKQINNKHLS RAEQSSRTTT FKVLDKNLQL  360
KLATSDVFVL LFLFQFQANL RHHSNFAKIN KIRIQLMMTR C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	2e-12	MYB_related family protein