PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29695
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 961aa    MW: 110903 Da    PI: 9.762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29695genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-129713399
                 -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 s  + l+ +sg +Wev+l  +k++g+ +++kGW eF k   L+ g f+vF+++g+s f   v ++++
  Ro01_G29695  9 SNSVCLKLPSGCQWEVEL--TKSDGEAWFEKGWPEFSKFYSLDYGHFLVFTYKGNSMF--EVCICDR 71
                 45789999**********..**********************************9999..9999987 PP
2B3407.1e-13160243187
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+ +++++++  +  l +  +f++++ ++k++ ++l+      rsW+ +l  + +s      +t GW+ Fvk n+L++gD+++F+l++ 
  Ro01_G29695 160 FIMITMQPHYIHRYTLNIRASFVKSFAKQKRQVVKLQ---VGDRSWSAYL--DVSSIYhtAKITIGWRAFVKKNHLRVGDVCIFELMEV 243
                  566778999999999***********98887754444...466*******..666655447899*********************9865 PP
3B3443.9e-142503301799
                  E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +lp  f+++h   + ke s    l+ + g +Wev++  +++ + ++++k W+eF k   L++gD++vF+++g+s+f  +vk+f+k
  Ro01_G29695 250 RLPMIFVKKHreRYGKELSNIAHLKLPCGTEWEVEV--TRHNDVFWFEKEWEEFSKFYSLQSGDSLVFQYEGDSRF--TVKIFDK 330
                  699999999999666789999***************..**********************************9999..*****98 PP
4B3391.5e-125125891996
                  -HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  19 pkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    kfa++h +kk+++    l  + g  sW v l+y  +k  r+ +++GW  Fv++n+Lk+gD ++F l+++++ ++ v +
  Ro01_G29695 512 NSKFAKKHLSKKPSN--ANLHVSGGaGSWPVGLKYeVGKEIRVKFQSGWTTFVRDNNLKVGDECLFVLTDDNRLSFEVVI 589
                  579*****7776665..6666666669********6666667*************************9987777666655 PP
5B3361.2e-116106901399
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  s+r  lp +f++++g++   s  + +e + g +We+ l  +++ g+++++k+W e  k   L+ gD++vF ++g+s+f   v++f+ 
  Ro01_G29695 610 SCRQGLPESFLDKYGKV--LSNRVHFELPCGLEWEIGL--TRYNGAVWFRKNWPELSKFYSLEKGDSLVFGYEGNSRF--QVSIFDG 690
                  57889*********977..8999***************..**********************************9999..9999985 PP
6B342.11.5e-137898511780
                  E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
           B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                  +lpkkf+++h +k++++   +l+     + W vkliy+ k+gr+ +++GW+eFv++++LkegD +
  Ro01_G29695 789 WLPKKFVQTHLLKQPSN--AMLQVsGARQIWPVKLIYEEKKGRVQFQSGWSEFVRDKDLKEGDKL 851
                  69********8886665..44444146699*********************************65 PP
7B349.38.8e-168599271787
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  +lp kfae++ +k +++  l++ +e+ r+W+v++       r++++ GW eFvkan+Lk+gD ++F+l+++
  Ro01_G29695 859 YLPSKFAERYLIKRPSHAILRVSSERTRTWSVNF--HYVATRTTFQCGWFEFVKANNLKTGDACIFMLTDN 927
                  79********88888999****************..55555688***********************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    
MMKYGDYISN SVCLKLPSGC QWEVELTKSD GEAWFEKGWP EFSKFYSLDY GHFLVFTYKG  60
NSMFEVCICD RTLTETEYPI TRDVSCGEDD NSIEIFHDST HSPKTREKCL SPSSRPPKRK  120
LVSPSNEVEM KERDDEGSST SSEKATALER AKAFKSENPF IMITMQPHYI HRYTLNIRAS  180
FVKSFAKQKR QVVKLQVGDR SWSAYLDVSS IYHTAKITIG WRAFVKKNHL RVGDVCIFEL  240
MEVNDLVLKR LPMIFVKKHR ERYGKELSNI AHLKLPCGTE WEVEVTRHND VFWFEKEWEE  300
FSKFYSLQSG DSLVFQYEGD SRFTVKIFDK TKTEIDYPIK APKMKENDVN GHFPLASTPL  360
PQKKKTASSS GGKKDLPAEK DEGGKSRTTQ RSRKPTIKVL ERVKAFEAEN PSYFWATMYP  420
SYIKGNMLWL SSEISMHMTH LIKNTGNVRL RVSEGTTRGT WTVEMKYDIE RATFRFRSGW  480
SKFVQGNNLN ADDLRFSAQE KLSITPCHQW FNSKFAKKHL SKKPSNANLH VSGGAGSWPV  540
GLKYEVGKEI RVKFQSGWTT FVRDNNLKVG DECLFVLTDD NRLSFEVVIV AANSALSPAP  600
HRSRKFHWIS CRQGLPESFL DKYGKVLSNR VHFELPCGLE WEIGLTRYNG AVWFRKNWPE  660
LSKFYSLEKG DSLVFGYEGN SRFQVSIFDG SNNMEIDYTT RMPKSEGTDD DDISLEILED  720
VRPSVLPHKK NRTVLSPKAE TNVNVEKSVI KKETHWSKSE KKRTDNFPAK KDGEGTSSTQ  780
RFQKQTPGWL PKKFVQTHLL KQPSNAMLQV SGARQIWPVK LIYEEKKGRV QFQSGWSEFV  840
RDKDLKEGDK LQIAPRHQYL PSKFAERYLI KRPSHAILRV SSERTRTWSV NFHYVATRTT  900
FQCGWFEFVK ANNLKTGDAC IFMLTDNINH IEAMKFTLSP LQARETTTAK DKFNTEKGQL  960
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-30B3 family protein