PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G23896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | B3 | ||||||||
Protein Properties | Length: 517aa MW: 57738.3 Da PI: 8.1634 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.7 | 2.5e-14 | 21 | 117 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrse 89 k+ +++l+ g + + fae++ g+ + + l++++gr+W ++ + + +g + Wk+Fv++n+Lk+gD +vF+l++ + Ro01_G23896 21 KIV-LASALRDGKIKIQGVFAEAYicaRGV--C--SVNLQNSDGRTWPTTCAVevwnN--RGDrrrqLQGRVSWKSFVQDNHLKVGDACVFELKKG-S 110 444.356777888999999**999987656..6..5***************7777552..3333444555589*******************9874.4 PP E..EEEE CS B3 90 felvvkv 96 + +++k+ Ro01_G23896 111 KVPTFKM 117 4466655 PP | |||||||
2 | B3 | 42.8 | 9.1e-14 | 143 | 229 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +l+ g l +p++ ++++g t+ l+ ++g +W ++l +k+ g+++l+kGW eF++ L+ g +++F+ +g s f v++f++ Ro01_G23896 143 TQALEDGKLEIPRTVVRQCGDR--LAETIFLKVPDGAQWGIEL--TKSNGKVWLQKGWPEFAEHYSLEHGSVLLFSSEGGySHF--GVQIFKR 229 56678889***********977..6669***************..*******************************88877777..8888876 PP | |||||||
3 | B3 | 43 | 8e-14 | 294 | 370 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp+kf++++ + + s + l+ +sg +Wev + ++++++++++kGW F k L+ g f++F ++g+s+f v +f++ Ro01_G23896 294 KLPNKFVKKYRE--HLSNSVCLKIPSGCEWEVGV--TRSGNKIWFEKGWPAFSKFYSLDYGAFLLFGYEGNSKF--QVCIFDT 370 59********74..48889***************..**********************************9999..9999987 PP | |||||||
4 | B3 | 42.1 | 1.6e-13 | 433 | 512 | 16 | 98 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l l +f++++ +++++ ++l + +rsW vkl++ ++ ++ l++GW F ++n L +gD+++F+l++ ++ l+v++fr Ro01_G23896 433 LNLRATFVQSFAKQEQQ--LVKL-QVGNRSWPVKLNVYNRHSAAKLSAGWVAFSNENCLSDGDVCIFELIQVNDIVLKVHIFR 512 55667788777766544..4444.4577*******8877777899*************************999999****998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence |
MSCSSRRDAG EPCFPAKSFF KIVLASALRD GKIKIQGVFA EAYICARGVC SVNLQNSDGR 60 TWPTTCAVEV WNNRGDRRRQ LQGRVSWKSF VQDNHLKVGD ACVFELKKGS KVPTFKMASR 120 GWRKRQGPAF PVTTPSFFTM VITQALEDGK LEIPRTVVRQ CGDRLAETIF LKVPDGAQWG 180 IELTKSNGKV WLQKGWPEFA EHYSLEHGSV LLFSSEGGYS HFGVQIFKRN TLEMNYPPNS 240 SSTVEMNYAS NSSHGDGDGA GTGADADADA DADDDDDDAD DADAGADAGS SVDKLPNKFV 300 KKYREHLSNS VCLKIPSGCE WEVGVTRSGN KIWFEKGWPA FSKFYSLDYG AFLLFGYEGN 360 SKFQVCIFDT SATEIDYPIR IEETDNINHK DDNSVEILDD FPRSCPKTRG KSPLPCPRPH 420 KRKRIITKKF KALNLRATFV QSFAKQEQQL VKLQVGNRSW PVKLNVYNRH SAAKLSAGWV 480 AFSNENCLSD GDVCIFELIQ VNDIVLKVHI FRLIPCN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 3e-23 | B3 family protein |