PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G18239

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 344aa MW: 38477.3 Da PI: 5.6922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G18239	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	24	9.8e-08	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F+r nL+ H+r H Ro01_G18239 134 HYCEICGKGFKRDANLRMHMRAH 156 68*******************99 PP
2	zf-C2H2	10.7	0.0017	225	248	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + Ro01_G18239 225 YSCNRCNkKSFSVVADLKSHLKHC 248 99*******************977 PP
3	zf-C2H2	13.4	0.00024	256	272	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrks L H+ Ro01_G18239 256 TCGTSFSRKSKLFGHMA 272 6**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSFPGQPFHF PTAYSADPEC PDPRVPLENL DSVRLRMDSL QVFLTESINN NSLISQEQMD 60 MVSAGISSAI HEIISNGAAL VACSRNPRPG PGPQSDCKVE EVKKEEENEL NDLGDEDSEI 120 VEVDAMELLA EHIHYCEICG KGFKRDANLR MHMRAHGNQF KTLEALAKPE KIGCFGGSAD 180 TSRHTRFSCP YVGCNRNKSH AKFRALKSVI CVKNHFKRSH CPKMYSCNRC NKKSFSVVAD 240 LKSHLKHCGE ARWRCTCGTS FSRKSKLFGH MALFEGHMPA VEDHKGNKHV TAAEEEDEEE 300 EDTTASFKAQ GLYPISEDTE YFDELFSGLG SIDDFSLEDM LVDL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSFPGQPFHF PTAYSADPEC PDPRVPLENL DSVRLRMDSL QVFLTESINN NSLISQEQMD  60
MVSAGISSAI HEIISNGAAL VACSRNPRPG PGPQSDCKVE EVKKEEENEL NDLGDEDSEI  120
VEVDAMELLA EHIHYCEICG KGFKRDANLR MHMRAHGNQF KTLEALAKPE KIGCFGGSAD  180
TSRHTRFSCP YVGCNRNKSH AKFRALKSVI CVKNHFKRSH CPKMYSCNRC NKKSFSVVAD  240
LKSHLKHCGE ARWRCTCGTS FSRKSKLFGH MALFEGHMPA VEDHKGNKHV TAAEEEDEEE  300
EDTTASFKAQ GLYPISEDTE YFDELFSGLG SIDDFSLEDM LVDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-71	C2H2 family protein