PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G15754

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 491aa MW: 55342.2 Da PI: 9.5992

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G15754	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.9	4.6e-08	129	171	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d+++q+ + + Ia +++ Rt +++k+r+++ Ro01_G15754 129 VWTKEETDQLFDLCQQFDLR-FIVIADRFPSSRTVEELKDRYYS 171 6*****************.*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MDAKDILGLP KTTHPLTQEK KSRPPKESQR KPDGISREVY ALIGGVPPLM PVVEPTQLKK 60 RPPTDEKITW QWLPFTNSAR KDDLQLYHWV RVVNGAPPTG DYSFAKYNKS VDVIKYTDEE 120 YEKYLTDPVW TKEETDQLFD LCQQFDLRFI VIADRFPSSR TVEELKDRYY SVSRHILIAR 180 AGSPADVSGH PLVKEPYKVT QEKERKRALS MVLSQTKHQE RKDAEVLAEA KRIAESRARM 240 VVRSARELEL PVTFNAGREN DERGIVPGES ISPLSNTVAP SNLMPENTST LGTLRMLRVY 300 LRTYALDQMI VAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKAVCSEHL ELRKEILTLL 360 NLQKELQYKE ADGSSYRDST YETPGTPKGL SVGNLLVPEN TENFLTLLNS SLHVVVIRIA 420 RERVGKRDQK RKGPGRVSEA PSSPAQSKRP RKLKATDIKP VTGNTGPVNP LYDGLSLEGC 480 AHMYMDDDSL N

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MDAKDILGLP KTTHPLTQEK KSRPPKESQR KPDGISREVY ALIGGVPPLM PVVEPTQLKK  60
RPPTDEKITW QWLPFTNSAR KDDLQLYHWV RVVNGAPPTG DYSFAKYNKS VDVIKYTDEE  120
YEKYLTDPVW TKEETDQLFD LCQQFDLRFI VIADRFPSSR TVEELKDRYY SVSRHILIAR  180
AGSPADVSGH PLVKEPYKVT QEKERKRALS MVLSQTKHQE RKDAEVLAEA KRIAESRARM  240
VVRSARELEL PVTFNAGREN DERGIVPGES ISPLSNTVAP SNLMPENTST LGTLRMLRVY  300
LRTYALDQMI VAASSSAGLR TIKRVEQSLQ ELGVNLKPRV PTKAVCSEHL ELRKEILTLL  360
NLQKELQYKE ADGSSYRDST YETPGTPKGL SVGNLLVPEN TENFLTLLNS SLHVVVIRIA  420
RERVGKRDQK RKGPGRVSEA PSSPAQSKRP RKLKATDIKP VTGNTGPVNP LYDGLSLEGC  480
AHMYMDDDSL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein