PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G14962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | TCP | ||||||||
Protein Properties | Length: 168aa MW: 18465.8 Da PI: 9.4712 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 23 | 2.4e-07 | 58 | 110 | 41 | 84 |
TCP 41 fdkdsktieWLlqqakpaikeltgt........ssssasec.......eaesssssasn 84 + +sk ++WL+++ak i+e ++ + + +a ++ ++as+ Ro01_G14962 58 HSNPSKVVDWLIKKAKSPIDEFEELpswnpsaqT------SsppvvpiSATQDTENASH 110 778**********************776554321......1111223322222222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
METHRKNGGQ PQQPPPPNAV VRCFTIGFGH KDIVLHRASE ILEARGHILR ATGCKDRHSN 60 PSKVVDWLIK KAKSPIDEFE ELPSWNPSAQ TSSPPVVPIS ATQDTENASH RFSMVEAPVS 120 SLDNRRTKMQ VLFPNGCGDG GRNDVVAPQL PTRFAVENQQ SKPRSATV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 7e-12 | TCP family protein |