PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G12263
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ZF-HD
Protein Properties Length: 286aa    MW: 30761.7 Da    PI: 6.3385
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G12263genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.81.6e-3069125259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +++rY+eClkNhA+ +Ggha+DGCgEf+++ g++gt +alkCaAC CHRnFHR+e++e
  Ro01_G12263  69 KACRYRECLKNHAVGIGGHALDGCGEFLAA-GADGTLDALKCAACSCHRNFHRKETDE 125
                  579**************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDFEDQEEHD EEMEMEPSYD SMVHNNNNNN NNNNNSGGGG GGGGGRVKMA SSGGGEGAVA  60
VAAQQPTRKA CRYRECLKNH AVGIGGHALD GCGEFLAAGA DGTLDALKCA ACSCHRNFHR  120
KETDEPYGQL VPHQGHVSSH HHGFGHPQFS PTATGYYRTP GGYLHVTTQH RPLALPSTSG  180
GGGTDQDDDM SNPSGGGGGG FGMGMGMGTT SSKKRFRTKF SQEQKERMLE LAERLSWRIQ  240
KQDEAAVQSF CDETGVKRHV LKLVSFTVGF SSWERGYDIS FETVEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.18e-42ZF-HD family protein