PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11191

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 494aa MW: 55313.3 Da PI: 9.0187

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11191	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	302	348	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Ro01_G11191 302 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 348 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MSPAFLYEIC QVVLELLQRE LKTTKTLVPH SWGLKPLPTL DSLPRKDPPP PRRKQFHSII 60 KGGYEKFDNA SSSTQVQLKA NLAKTKGNRQ QFNSPGLQNS NQKKEIQSRL SSISSQDQDP 120 LFNTFSHIMD VSSAKWFSDL GMDDYNFIHE GFTAHDIATA LGGNFNQSFS NESYSSYPTL 180 TTKNTPTTTL SGGSSINETN SQTSLGRPTK LVKTNSWNSG ITEHVSPKPS KSSSSHILSF 240 ENTNLKSSPP SKPHQQFSTN FDSTLKPKNE APSEICMQFE NQSYGTNKRP YSTTRTPSHA 300 QDHIMAERKR REKLSQRFIA LSAIVPGLKK MDKASVLGDA IKYVKQLQES VKVLEEQTKK 360 RTVESVVFVK KSQLVSSDDD TSSCDENFDG RSSDESLPEI EARVSEKDVL IRIHCENQKG 420 FVVKILSEIE KLQLSVVNSS VLPFGKSTLD ITIIAQMDDE FNMTVKDLAK SLRVALLKFI 480 QVYYACDSLR FSDE

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MSPAFLYEIC QVVLELLQRE LKTTKTLVPH SWGLKPLPTL DSLPRKDPPP PRRKQFHSII  60
KGGYEKFDNA SSSTQVQLKA NLAKTKGNRQ QFNSPGLQNS NQKKEIQSRL SSISSQDQDP  120
LFNTFSHIMD VSSAKWFSDL GMDDYNFIHE GFTAHDIATA LGGNFNQSFS NESYSSYPTL  180
TTKNTPTTTL SGGSSINETN SQTSLGRPTK LVKTNSWNSG ITEHVSPKPS KSSSSHILSF  240
ENTNLKSSPP SKPHQQFSTN FDSTLKPKNE APSEICMQFE NQSYGTNKRP YSTTRTPSHA  300
QDHIMAERKR REKLSQRFIA LSAIVPGLKK MDKASVLGDA IKYVKQLQES VKVLEEQTKK  360
RTVESVVFVK KSQLVSSDDD TSSCDENFDG RSSDESLPEI EARVSEKDVL IRIHCENQKG  420
FVVKILSEIE KLQLSVVNSS VLPFGKSTLD ITIIAQMDDE FNMTVKDLAK SLRVALLKFI  480
QVYYACDSLR FSDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	307	312	ERKRRE
2	308	313	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-72	bHLH family protein