PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10795
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 294aa    MW: 32375 Da    PI: 5.3221
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10795genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++ +++isw+e+g++fvv+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell++i+
   Ro01_G10795  13 FLMKTFQLVDDPASDDVISWNESGTAFVVWKTVDFARDMLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANDNFRRGEKELLSEIR 100
                   9***************************************************************9999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Ro01_G10795 101 RRKA 104
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MIKMAQRSVP APFLMKTFQL VDDPASDDVI SWNESGTAFV VWKTVDFARD MLPNYFKHNN  60
FSSFVRQLNT YGFRKTVPDK WEFANDNFRR GEKELLSEIR RRKAVASSPA QATAAEKSGG  120
DGPSTLSNSG EDLASTSTSS PDSKNPGSVE TAAAAGQAAD LSGENEKLKK DNETLSSELA  180
QTKKQCDELV AFLMEYMKVG PDQINQIMRQ GSFESSSGDV DDHDHDFDDD EKNVAGEEEG  240
LKLFGVWVKG KETEEKKKRR DEKLGVGGGG GPQAKKMKMA EFHAPLRKSG KVCN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-89HSF family protein