PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G10769
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 352aa    MW: 39529.8 Da    PI: 5.9661
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G10769genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.9e-14121208180
                  EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfv 80 
                  f+k+lt+sdv  + +rl ++k+++++h       +++  +++++t +d+ g+++ + ++++ ++ r vlt+GWk F++a+gL    Dfv
  Ro01_G10769 121 FEKQLTNSDVKDNqSRLAMSKEHVKKHlipllneNEDLSRGIQVTTYDLAGKEYPMVFKIWVSKIR-VLTSGWKTFCHAHGLVkKQDFV 208
                  99********999899**************9987334448899********************999.79************97466776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MNSEESSRAS KNDEDDKGMM AVFNLCYMKH AVVDSERETH ILEDTNHKSL GQLGLSSLNA  60
GTKRKALEIE ELEEAIIVAQ GLPEANPQVQ QQGLFYGNYA PPNLPPVPSL RKLIEICSKP  120
FEKQLTNSDV KDNQSRLAMS KEHVKKHLIP LLNENEDLSR GIQVTTYDLA GKEYPMVFKI  180
WVSKIRVLTS GWKTFCHAHG LVKKQDFVAV WMFRQHSNWQ TLLCNQVEKV AGNAATQGNS  240
ITNRKLANFD PWINSKSLVE FQHNFLIEPN IFGQWCNHRP TPQGVVIANQ PPNLDKLNDP  300
LVVVQEILDD LSVVGKSEGS GEQRVTGVDT DFDGVLSTDE LDKHAQQLCF IS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-22B3 family protein