PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G10330

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 309aa MW: 34920.9 Da PI: 7.9382

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G10330	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	21	67	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + W +eEd++l+++v+ +G g+W+t++++ g++R +k+c++rw +yl Ro01_G10330 21 NLWRPEEDLILKKYVETHGEGNWATVSKRSGLNRGGKSCRLRWKNYL 67 56*******************************************97 PP
2	Myb_DNA-binding	51.9	1.8e-16	73	118	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l Ro01_G10330 73 RGDMSQEEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 118 7899****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MENKRVKALQ QEQPSSCNKK NLWRPEEDLI LKKYVETHGE GNWATVSKRS GLNRGGKSCR 60 LRWKNYLRPN IKRGDMSQEE QDLIIRMHKL LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK 120 INITCCCPAP APGGRGGRRR KANDHDCYSK DIHHHQDNCH YGNKKSKIIS STESTQIENN 180 TRQVGSCRKE EERSSSSSSI MTATNYPHWL GETDYQSLNF DCVDIDHQYS TPSSSWVQYY 240 LPTVTDNNAT SSSTFVFDDE PFIASMDSFL LFEAAFGCIP AAAAAATEGM QSSVMTPLSS 300 ADDPHSPHI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	167	RRRKANDHDCYSKDIHHHQDNCHYGNKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52600.1	6e-65	MYB family protein