PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G08675
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 304aa    MW: 35282.2 Da    PI: 8.7363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G08675genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-1564111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ll++ ++++G   W+ ++ + g++R++k+c++rw++yl
      Ro01_G08675  64 KGTWTKEEDDLLKQFIEKHGEVKWHQVPLKAGLNRCRKSCRLRWLNYL 111
                      799*****************99************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MSILFFWVFH FVDSRQCTLH VLSMCFNDTL YIWISTLGLQ RIKFGFKAYQ VISLISMEGL  60
GVRKGTWTKE EDDLLKQFIE KHGEVKWHQV PLKAGLNRCR KSCRLRWLNY LKPNIKRGDF  120
TEDEDDLIIR LHKLLGNRSH QNPEEQQRKK KASDAKKIKD KSQEKTNATV IVRPQPRTFI  180
RRLNFSERRD ANLEHIHPKE NSTTSLPTPP QTVELESVID WWKALSEDSS TDGIERRTCS  240
SLGLEEDLFT NFWVEDLLQD SAPITTIGTH NLHFSLRLSP APESQQSPPL SVSSTPRRTP  300
ELSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-37MYB family protein