PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G07682
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 328aa    MW: 37208.5 Da    PI: 5.7076
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G07682genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.81.9e-34121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d+++++li w + +nsf+v+++ ef++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll+++ 
   Ro01_G07682  12 FVMKTYQMVNDPTTDRLIAWGRANNSFIVVEPLEFSHRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLKNVV 99 
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Ro01_G07682 100 RRKH 103
                   9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MMEDSSNVIA PFVMKTYQMV NDPTTDRLIA WGRANNSFIV VEPLEFSHRL LPAYFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNVVR RKHHMNRTMN TASYCKAEDL  120
DEEEIVMEIA RLKQEQSSLA EEVENMNKRL EATERRPQQM MALLHRVAEN PEILPRMMLE  180
KDRRVGEKKR RLMIASTSST SSSGMGATNS VKTEDEDDGA IGMFSSPEPG FEIESFSRGS  240
TSPETSTGKG RWSQSRVFDR TRTDQDLYGN STALSTKSDL ASSSDSGYGY GYGYGYSGSG  300
GVGYFAELEE SPPPPYPFSL LEGVYHVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-86HSF family protein