PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G07656

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CPP

Protein Properties

Length: 584aa MW: 61785.5 Da PI: 7.9223

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G07656	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	42	1.9e-13	117	156	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ Ro01_G07656 117 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCCNNVEN 156 89************************.******9875 PP
2	TCR	51.1	2.7e-16	201	240	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Ro01_G07656 201 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 240 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MGEGDGAGSA PKKAQSDAAT ASATTASTSD VPAKKLARQL DFTGFGAASG SVALPEPPKP 60 QLQTVTVPQN QPKPQVVGVP VPVPPQPPIP SVRPVKPESP KSRPRPNVEA KDGTPKKQKQ 120 CNCKHSRCLK LYCECFASGI YCDGCNCVNC CNNVENEGAR RDAVEATLER NPNAFRPKIA 180 SSPHGPRDSR EEAGELLILA KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCIDCKNFE 240 GSEERQALFH GDHSNNMAYL QQAANAAITG AIGSSGYISS PPVSKKRKGQ ELFFGPTAKD 300 PSAHRIGQFP QANHLRPPAP SSSSVPVARL GGTAGLGPSK FTYRSLLADI IQPQDLKELC 360 SVLVVVAEEA AKTLADRRNA AEKQAEYQTE TSFASATEDR LQSQKESDAQ KAVTDDCSTA 420 NQADKMIPED SNSDGADGPK VRPMSPGTLA LMCDEQDTMF MAAASPNGLM GDGCNTSSQL 480 PNGQGMTEVY AEQERIVLTK FQAECSSLAR SEAAAQREQV SNGTTNARME TGSQQGPVSN 540 GVVRTAFPPT AKTSQMVTAA VLAPSTVLPK PPSVPENGGN KPKA

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MGEGDGAGSA PKKAQSDAAT ASATTASTSD VPAKKLARQL DFTGFGAASG SVALPEPPKP  60
QLQTVTVPQN QPKPQVVGVP VPVPPQPPIP SVRPVKPESP KSRPRPNVEA KDGTPKKQKQ  120
CNCKHSRCLK LYCECFASGI YCDGCNCVNC CNNVENEGAR RDAVEATLER NPNAFRPKIA  180
SSPHGPRDSR EEAGELLILA KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCIDCKNFE  240
GSEERQALFH GDHSNNMAYL QQAANAAITG AIGSSGYISS PPVSKKRKGQ ELFFGPTAKD  300
PSAHRIGQFP QANHLRPPAP SSSSVPVARL GGTAGLGPSK FTYRSLLADI IQPQDLKELC  360
SVLVVVAEEA AKTLADRRNA AEKQAEYQTE TSFASATEDR LQSQKESDAQ KAVTDDCSTA  420
NQADKMIPED SNSDGADGPK VRPMSPGTLA LMCDEQDTMF MAAASPNGLM GDGCNTSSQL  480
PNGQGMTEVY AEQERIVLTK FQAECSSLAR SEAAAQREQV SNGTTNARME TGSQQGPVSN  540
GVVRTAFPPT AKTSQMVTAA VLAPSTVLPK PPSVPENGGN KPKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	CPP family protein