PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G07631
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 425aa    MW: 47252.4 Da    PI: 7.071
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G07631genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.77.1e-13393741374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lL++cAe v+ gdl+la +l+++++ l  + ++g  + ++a yf  AL++r++   ++ + +++ s        e+   +++f+e++P+lkf+h+
  Ro01_G07631   9 LVQLLVTCAESVQRGDLALAGSLIENMQALltRVNTGCGIGKVAGYFIDALSRRVFT--PQSVGSVAGS------AHENELLYHYFYEACPYLKFAHF 98 
                  689**************************977888899******************9..4333333333......3455678899************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++a+rled+++++L
  Ro01_G07631  99 TANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLADLARSVNVRFAFRGVAASRLEDVKPWML 196
                  ************************************************************************************************** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+p+Ea+aVn+++qlhrll ++ + +s+ + +L  +++l+Pk+v+vveqeadhn++ Flerf+eal+yys +fdsl+a +  + + ++ + +++++r
  Ro01_G07631 197 QVSPKEAVAVNSIMQLHRLLGSDSNRSSPMEMMLGWIRNLNPKIVTVVEQEADHNKAGFLERFTEALYYYSNMFDSLDACA--AMQPDKALAEMYIQR 292
                  *****************************************************************************9994..567788888999*** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+nvv+ceg++r+erhe l+kWr rl++aGF+p++l+++a kqa++ll  ++ +gyrvee++g+l+lgW++rpL+++SaW+
  Ro01_G07631 293 EICNVVCCEGSARVERHEPLAKWRTRLGQAGFRPLHLGSNAFKQASMLLTLFSAEGYRVEENEGCLTLGWHSRPLIAASAWQ 374
                  *********************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    
MEENSGIRLV QLLVTCAESV QRGDLALAGS LIENMQALLT RVNTGCGIGK VAGYFIDALS  60
RRVFTPQSVG SVAGSAHENE LLYHYFYEAC PYLKFAHFTA NQAILEAFQG HDCVHVIDFN  120
LMHGLQWPAL IQALALRPGG PPLLRLTGIG PPSPDGRDSL REIGLRLADL ARSVNVRFAF  180
RGVAASRLED VKPWMLQVSP KEAVAVNSIM QLHRLLGSDS NRSSPMEMML GWIRNLNPKI  240
VTVVEQEADH NKAGFLERFT EALYYYSNMF DSLDACAAMQ PDKALAEMYI QREICNVVCC  300
EGSARVERHE PLAKWRTRLG QAGFRPLHLG SNAFKQASML LTLFSAEGYR VEENEGCLTL  360
GWHSRPLIAA SAWQVMPLPE ATATATNPLG IWYKFSSSVY MDISILRVYG GKIPDFQNFW  420
IQVLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-123GRAS family protein