PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G05057
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 521aa    MW: 57814.1 Da    PI: 5.5307
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G05057genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.4e-26195251259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK+vk+ + +rsYYrCts++C+vkk +e++++ ++v+ei+Y+++H+h+
  Ro01_G05057 195 SDGYNWRKYGQKQVKSPPGSRSYYRCTSSECCVKK-IECCDNSGHVTEIVYKSQHTHD 251
                  7********************************98.*********************7 PP
2WRKY97.77.7e-31382438359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ +++++v+itY+g H+h+
  Ro01_G05057 382 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNTSAVIITYKGIHDHD 438
                  9*******************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    
MAEHESFEAL QFEKQKQNGQ EQEDEEYEEE GDEDENDNEE EKQRSEFQPG ESHRSVPESR  60
DTQLETLAVP PMLELTENDQ YAGFGVNSAL PSIDGAQFQE QIGISHQEVL ASTSYQPAQA  120
QTQNMQQLIS YPTSLSELSP TSVTQSISPA PSPILLEQRL SSKKVKSMCT PEEDKQNSSD  180
FKSISPVPLV KTSASDGYNW RKYGQKQVKS PPGSRSYYRC TSSECCVKKI ECCDNSGHVT  240
EIVYKSQHTH DPPRRSNCTR EIKVASSTEC VGNSLIEYPC GILNDSELST TSKEPIQENP  300
IPERKRQNSS DSDGNGDVKI KEEHINEPEA KRRRVFQNLT FSSSPLILLK KSSLEYSDSL  360
LKPGKKPKFV VHAAGDVGIS GDGYRWRKYG QKMVKGNPHP RNYYRCTSAG CPVRKHIETA  420
VDNTSAVIIT YKGIHDHDMP VPKKRHGPPS APLVAAAAPA SMNNLQIVKS DSETHQNQIS  480
STQWSVDKGG ELTGETLDLG GEKAMESART LLSIGFEIKP C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331335KRRRV
2331368KRRRVFQNLTFSSSPLILLKKSSLEYSDSLLKPGKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-109WRKY family protein