PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G04274

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 603aa MW: 65301.1 Da PI: 6.1603

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G04274	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	226	270	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Ro01_G04274 226 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 270 79****************************************985 PP
2	QLQ	59.1	1.3e-20	153	189	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyL+an+PvP++Ll +++k Ro01_G04274 153 GPFTPSQWIELEHQALIYKYLNANAPVPSNLLIPLKK 189 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MDFGVVGMDM DCLMGPETRE EEAHSHVVSG PETKPGHDNG SGLSFKQQRS WPVEDDWRAS 60 KMPKPDDMSS PRTMPLPQLL MRSTSLAPPR QEQMLSFSSN KSEVTFLSKD GGSSDFAYYQ 120 RMPTPSSAYA RNAAYGSGSL NANMHGSYAA VRGPFTPSQW IELEHQALIY KYLNANAPVP 180 SNLLIPLKKA LYPYGLSGSS PNSCKLLQSH LVAWGSFHLG YSGNADPEPG RCRRTDGKKW 240 RCSRDAVADQ KYCERHINRG RHRSRKPVEG QTGHGASGRA NSKAVAPPVT ASMSTSVSGV 300 SQQQLKSLEP APPADAAAAT AANSSVDVFA NRMQDPQGLS VMSASSMKPE SNSSSFNIPK 360 QDFPMEESSQ SEFGLVSTDS LLNPSHRNSY IPKDFGGSFL DFTDQETQDQ NPLHQFIDDW 420 PKDQSSQSVV TWPDDIKSDW TQLSMSIPMA SDFSSSSSSP TQDKLGLSPL RLSREFEPTQ 480 NLGVSNDHSE PTEKQTNWVP IPWRSSMGGP LGEVLTNTSS CVNSKNSSSS NTSPLNLLNE 540 GWDGSSQLES SPTGVLQKST FCSLSNSSSG SSPRAENKKS HDGASLYDDV LGSTLASSSV 600 PTL

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MDFGVVGMDM DCLMGPETRE EEAHSHVVSG PETKPGHDNG SGLSFKQQRS WPVEDDWRAS  60
KMPKPDDMSS PRTMPLPQLL MRSTSLAPPR QEQMLSFSSN KSEVTFLSKD GGSSDFAYYQ  120
RMPTPSSAYA RNAAYGSGSL NANMHGSYAA VRGPFTPSQW IELEHQALIY KYLNANAPVP  180
SNLLIPLKKA LYPYGLSGSS PNSCKLLQSH LVAWGSFHLG YSGNADPEPG RCRRTDGKKW  240
RCSRDAVADQ KYCERHINRG RHRSRKPVEG QTGHGASGRA NSKAVAPPVT ASMSTSVSGV  300
SQQQLKSLEP APPADAAAAT AANSSVDVFA NRMQDPQGLS VMSASSMKPE SNSSSFNIPK  360
QDFPMEESSQ SEFGLVSTDS LLNPSHRNSY IPKDFGGSFL DFTDQETQDQ NPLHQFIDDW  420
PKDQSSQSVV TWPDDIKSDW TQLSMSIPMA SDFSSSSSSP TQDKLGLSPL RLSREFEPTQ  480
NLGVSNDHSE PTEKQTNWVP IPWRSSMGGP LGEVLTNTSS CVNSKNSSSS NTSPLNLLNE  540
GWDGSSQLES SPTGVLQKST FCSLSNSSSG SSPRAENKKS HDGASLYDDV LGSTLASSSV  600
PTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-109	GRF family protein