PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G04161

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 309aa MW: 33797 Da PI: 8.7494

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G04161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.2e-19	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + Ro01_G04161 15 KGPWSPEEDDALQNLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 60 79****************************.*********985 PP
2	Myb_DNA-binding	55.6	1.2e-17	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ Ro01_G04161 69 AFTPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 111 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MAVTRKEMDR MDRIKGPWSP EEDDALQNLV QKHGPRNWSL ISKAIPGRSG KSCRLRWCNQ 60 LSPQVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCSSLS 120 DDGNGNGVLM GGGYDGNFHD QPPLKRSVSA GSGVPVSTEL FMNPGSPSGS DVSDSSVQVM 180 SSPHVYRPVA RSGGVLPPVE TTSSSNNNNH INLNNDPPTS LSLSLPGVDS CEVSNRVATE 240 ATQAPGPAPV RDPMRNFPAE LLELMQGMIK KEVRSYMEGL EQSGVCVMKQ QNDGFRNVAV 300 KRIGISRIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	6e-86	MYB family protein