PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G03060
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 394aa    MW: 43087 Da    PI: 4.6902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G03060genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13255305555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR++i +++ +L+el+Pk+ ka+s   +Ka++L + +eY+k Lq
  Ro01_G03060 255 HSIAERLRREKIADRMKNLQELVPKSNKASSSFTDKASMLDEIIEYVKFLQ 305
                  99***********************77899999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MKNGGEGSNM HPLLLMMDEI LDHFFSSSSW TDVDVKERSS LDCYENPQTN EMFLSSLGMI  60
EDHNNNSPSY LSNSNHSMES LAAQSANSSA AHDLESDAQD NGNNCAANFS NDQMQYDMDG  120
NMVRSTSVSS IEPQNVGGNS VFQRLNGDVE TLSPVSQLWP PLPSYEGVSS SLCPPVCGFG  180
NNDFYDLSDL VTTEKGNQEM GNYALPSFAS GPQIPMAMTG LQSLPQTTST TLSAECTGTR  240
KPRMRARRGQ ATDPHSIAER LRREKIADRM KNLQELVPKS NKASSSFTDK ASMLDEIIEY  300
VKFLQQQIKV LSKSRLGAKG TTIPLISDSQ AKGANGLSPF PSLGQVDHDT NSFNEIAFEQ  360
VVKLMETDVT KAVHYLQSKG PLVVNCCLFC ESSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.19e-44bHLH family protein