PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G02956
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 336aa    MW: 37204.9 Da    PI: 9.7259
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G02956genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.7e-32183239158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  Ro01_G02956 183 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-LKARKPYLHESRHLHALNRVRGSGGRF 239
                  57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MPCQIPKDTL LELAIPTQNL EKRRFNQTSV QSMPINANCM SWNPNKRQIS PSSSKDVSFK  60
VDLPPQLRHD AKHLGLQVLP DHGSCTTRSI VPSQDQCLSS ESGEDEIRGK GVEGKTKPAL  120
LPSSLDLMPH PSQVGYNNLV SQFHPYADHY FGGFMTAYGP QAMPPMVGIA PPRVPLPLDL  180
QEDGPIYVNA KQYHGILRRR QSRAKLEAQN KLLKARKPYL HESRHLHALN RVRGSGGRFL  240
SKKELREFDQ SSHHVSDPNS HQQNTQERES HHSGSSDLVT ADASNSGITS VSNTNPIFRQ  300
PDRRFSGGIP PHMSGAMQFS GGIMHGGNQH CASVVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-48NF-YA family protein