PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G01121

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SRS

Protein Properties

Length: 278aa MW: 29061.8 Da PI: 8.1693

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G01121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.9	1.3e-68	38	200	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrel....kskkqsal.s 87 t+sCqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa+krrerqqq+ +a +++++++ +++kr re+ + +++s+l + Ro01_G01121 38 STVSCQDCGNQAKKDCVHQRCRTCCKSRGFDCATHVKSTWVPASKRRERQQQQLTALQQQQQHHqqevqlirgGGENPKRLRESnnnpNPSSNSSLaA 135 5789*******************************************7766555444444444899999885566666666622222222333202 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t++ ++++ le+ ++P+ev s+avfrcvrvs++dd+++++aYqtav+igGhvfkGiLy+qG+++ Ro01_G01121 136 CTRI--ITNTSGLEVGNFPPEVTSPAVFRCVRVSAIDDDDDQYAYQTAVNIGGHVFKGILYHQGPDA 200 3333..34455788889**********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MAGFFSLGGG GGRSNNNPDN RNHNHHHESS GGGSTSGSTV SCQDCGNQAK KDCVHQRCRT 60 CCKSRGFDCA THVKSTWVPA SKRRERQQQQ LTALQQQQQH HQQEVQLIRG GGENPKRLRE 120 SNNNPNPSSN SSLAACTRII TNTSGLEVGN FPPEVTSPAV FRCVRVSAID DDDDQYAYQT 180 AVNIGGHVFK GILYHQGPDA NYNMSTAGES SSGGGGGGGG GGGGVIQPLN LITAAPTTAG 240 SGGVTVASGS GTLMDPNSLY PANPFMASGT QFFLPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-56	SRS family protein